Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01357 and BPUM_3552
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:57
# Commandline: needle
# -asequence dna-align/BSNT_01357___yfjC.1.24716.seq
# -bsequence dna-align/BPUM_3552___yfjC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01357___yfjC-BPUM_3552___yfjC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01357___yfjC-BPUM_3552___yfjC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01357___yfjC
# 2: BPUM_3552___yfjC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 889
# Identity: 479/889 (53.9%)
# Similarity: 479/889 (53.9%)
# Gaps: 251/889 (28.2%)
# Score: 1153.0
#
#
#=======================================
BSNT_01357___ 1 ----ATGAAGC--AGTTTACAATTAGCATAGAAGAACTCTTATTTTGCTT 44
|| .||| |||.|| ||.||.||.||||||.|.|||.|.||
BPUM_3552___y 1 TTGGAT-CAGCTAAGTCTA-----AGTATTGAGGAACTCATCTTTAGTTT 44
BSNT_01357___ 45 TTACAGCGAAGGGTTTTTTGAACAGGGGATGGCCTTGAAGCAGGCCTATT 94
||||||.|||||.|.||||||||||||.|||.||||.|||.|.|||||||
BPUM_3552___y 45 TTACAGTGAAGGCTATTTTGAACAGGGCATGTCCTTAAAGGAAGCCTATT 94
BSNT_01357___ 95 TTCCGGAAATAGAAGATGAACAGCTCGGCGCTTTGTTCGAAGCAGCTTGC 144
..||.||..||||.||.||.|...|.||...|||.||.|||...||.|||
BPUM_3552___y 95 ACCCTGATGTAGAGGACGAGCGATTAGGTTTTTTATTTGAAATTGCGTGC 144
BSNT_01357___ 145 CGCTCACTCTTAGCT-----AAGGATGCAGCGGAATATCGGAACCATCAA 189
|| |||||.||| |||| ||.|..|||||.||..|||...|||
BPUM_3552___y 145 CG----CTCTTTGCTCGCAAAAGG-TGTACTGGAATTTCAAAACAGACAA 189
BSNT_01357___ 190 TATCGGT-TAAAGGAC-GAGTACTGTCCGTTTATCCATGTATTAAACGAC 237
|||||.| ||||| | ||.|||.|||..||.||.||.|...|.||.||.
BPUM_3552___y 190 TATCGTTATAAAG--CGGAATACCGTCATTTCATTCAGGCGATGAATGAT 237
BSNT_01357___ 238 G---CTGACTATACAGTGAAGCTTTCTAAATTTAACGGGCAAGGCGCCGA 284
| ||.|| ||..|.|||...|||..|||| ||| ||
BPUM_3552___y 238 GCATCTCAC---ACCATCAAGGCGTCTCGATTT---GGG---------GA 272
BSNT_01357___ 285 -ACAGAATGTGTCCTGCCATGTATCAAAATTCGGCACCTAC--TCTCACG 331
|.|| |||.| .||||| .|.||||.| ||.||||
BPUM_3552___y 273 TAAAG-------------ATGAA--GAAATT-AGTACCTCCTTTCACACG 306
BSNT_01357___ 332 A-AC-------------------TC-----CTTTTTGATGAACAAGTCCA 356
| || || ||.|.||||.||||||||||
BPUM_3552___y 307 ACACAGATGGGCGTATATGCGCATCATACGCTGTATGATCAACAAGTCCA 356
BSNT_01357___ 357 TCGCATTACAAAAATGGAATCAAGTGAAGGGTTACTTGCTAAGACAGA-- 404
||..||| |||| ||.||||||.|.||..|| ||.||||
BPUM_3552___y 357 TCAGATT-CAAA---------AACTGAAGGATGACCAGC--AGGCAGAGG 394
BSNT_01357___ 405 ------TGAGT---TTTTACATATAATAGATACAGAGGA-TAAAAGA--- 441
|||.| ||||.|| |.|||||||.|| | ||
BPUM_3552___y 395 AACAAGTGACTGCCTTTTTCA------ACATACAGATGAGT----GATCA 434
BSNT_01357___ 442 ----GAATCGATTGTGACATTGACATCAAATGAATTTGAAAAACTCTTGG 487
|||||..|..||||..||..|.||.|.|||||||||||.||.||.|
BPUM_3552___y 435 CCCTGAATCTGTCATGACCCTGCAAGCAGAGGAATTTGAAAAGCTATTAG 484
BSNT_01357___ 488 AG-----------GGCGCTTCAGACAACCCTTCATATCTAAAAGAG---- 522
|| |||| || |||||||
BPUM_3552___y 485 AGCAAGCAAGTGAGGCG--------AA------------AAAAGAGTGGC 514
BSNT_01357___ 523 ---------TTCCTTGAAAAACATGACCACCAAGAGGACGTTACCCG--- 560
|||||.||..| ||..||.|||| ||.||
BPUM_3552___y 515 CTTCCTTCCTTCCTCGAGCA----GAGAACGAAGA-------ACTCGTGC 553
BSNT_01357___ 561 ----ATTTG---CAAATGATCTGGCTATGCGGAAAGGGAAA-ATGGATAC 602
||||| |..|||..|.|.|.| ||||.||||| |||||..|
BPUM_3552___y 554 AGTCATTTGTTTCGGATGTACAGACGA----GAAAAGGAAAGATGGACTC 599
BSNT_01357___ 603 ACTTATG-----CGTCTGGCATATGGCAAAGATAACACTCCTGAAGTGG- 646
.||.||| |||| ||.|.||||.||||.||.|||||.||||
BPUM_3552___y 600 CCTAATGAAGGTCGTC-----TACGACAAAAATAATACGCCTGATGTGGA 644
BSNT_01357___ 647 --CTGACATGGCATTTGTCCTGCCGGGGGCCCACCATACTTGGCTTGTCA 694
|| |||..||||||..|.||.||.|...|.||..|.||||||||..
BPUM_3552___y 645 ATCT---ATGTTATTTGTTATTCCAGGTGAGAAACAGTCGTGGCTTGTGT 691
BSNT_01357___ 695 CAGGCATCACCCAGAA--TGAATTTTCTATCCTC------CCTGCTCAT- 735
|.||.||.| .|||| ||||||| |.| .|.||||||
BPUM_3552___y 692 CGGGAATAA--AAGAAAGTGAATTT------CGCGTGGAGACGGCTCATA 733
BSNT_01357___ 736 ---AAGGAT---GTTGTAAATCAAATCATTTCAAAATGA 768
|.|||| |||.||.| |||.||
BPUM_3552___y 734 GAGACGGATTACGTTCTATA---------TTCTAA---- 759
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