Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03509 and BPUM_3549
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:02
# Commandline: needle
# -asequence dna-align/BSNT_03509___ansR.1.24716.seq
# -bsequence dna-align/BPUM_3549___ansR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03509___ansR-BPUM_3549___ansR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03509___ansR-BPUM_3549___ansR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03509___ansR
# 2: BPUM_3549___ansR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 394
# Identity: 238/394 (60.4%)
# Similarity: 238/394 (60.4%)
# Gaps: 89/394 (22.6%)
# Score: 687.5
#
#
#=======================================
BSNT_03509___ 1 ATGAATCTAGATCGTTTAACTGAAT-TGAGAAAAAAGAAAAATTGGTCGC 49
||||..||.||||||||||| .|.| |.||||||||||||||.|||||.|
BPUM_3549___a 1 ATGATACTCGATCGTTTAAC-CACTCTTAGAAAAAAGAAAAAATGGTCTC 49
BSNT_03509___ 50 TTCAATATACAGCTGACCTTCTCGGTATCGCAAAAAGCACATATGCCGGC 99
|.||..||||.||.||.|..||.||||||||.||||||||.||||||||.
BPUM_3549___a 50 TCCAGCATACGGCAGATCGCCTAGGTATCGCCAAAAGCACCTATGCCGGT 99
BSNT_03509___ 100 TACGAGTCAGGCTACCGACGGCCTTCACTTGAAGC------GCTTGCCAT 143
|||||.||.||.||||||||.|||||.|||||||| || ||
BPUM_3549___a 100 TACGAATCTGGGTACCGACGACCTTCGCTTGAAGCAGTGAAGC--GC--- 144
BSNT_03509___ 144 GCTGGCTGACCTCTTTGACACAACCTGCGA-TGAACTTTTA--------- 183
||||||||..|.|.|||.||..|| | |||..|||||
BPUM_3549___a 145 -CTGGCTGATTTGTATGATACGTCC----ATTGATTTTTTACTTGGTAGA 189
BSNT_03509___ 184 --GGCCG----CGAGAAAC-----AAAAGCAGACTGCTCCTCAGGCCAT- 221
||.|| .||||.|| ||||.| .|||.| ||
BPUM_3549___a 190 ACGGACGAGCCAGAGATACAACGTAAAATC--TCTGAT---------ATC 228
BSNT_03509___ 222 AGAATTGGCC--ACGTGGAGC------AGCCTTGACTTTACCATTTCTGT 263
|.|||||..| ||| |.||| || || ||||||..|||
BPUM_3549___a 229 AAAATTGAACTGACG-GAAGCAAAAGAAG----GA----ACCATTCTTGT 269
BSNT_03509___ 264 TGATGGCCAGCCGCTGAGTGAAGATGAAATCATCCAGCTGATTACCTTTA 313
.||.||....||.||.|.|||.||.|||||||..|||||..||.||||||
BPUM_3549___a 270 AGACGGTGTTCCCCTAAATGATGAAGAAATCAAACAGCTTGTTGCCTTTA 319
BSNT_03509___ 314 TACGCACAAAAA------GAAAAGTACAGGAGGAACTGAGTTAA 351
|.||..|.|||| .||||||| |||
BPUM_3549___a 320 TTCGGGCGAAAAACACCCTAAAAGTA---------------TAA 348
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