Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05524 and BPUM_3545
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:08
# Commandline: needle
# -asequence dna-align/BSNT_05524___ywqH.1.24716.seq
# -bsequence dna-align/BPUM_3545.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05524___ywqH-BPUM_3545.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05524___ywqH-BPUM_3545.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05524___ywqH
# 2: BPUM_3545
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 527
# Identity: 265/527 (50.3%)
# Similarity: 265/527 (50.3%)
# Gaps: 205/527 (38.9%)
# Score: 556.0
#
#
#=======================================
BSNT_05524___ 1 ATGGGTTATGAAAGTATGC-TAGCGGATATCAAAAG-----TTCGCTCAA 44
|||| || ||.||||||| | |.|.||.||
BPUM_3545 1 -------ATGA------GCTTATCGGATAT-----GCTGTCTGCCCTAAA 32
BSNT_05524___ 45 CGG-------------AAAAATTTCCGACGTGGAAGACAA----GATCGA 77
||| |||||..| .||..|.|||||.|| |.||||
BPUM_3545 33 CGGTGGCATTACAAGTAAAAAGGT-AGAAATCGAAGAGAAAATCGCTCGA 81
BSNT_05524___ 78 AAAGCTGAAAAAAGCAAAA---AAGGACATAGACACAC-TG--CAAGAAG 121
||||||||.||.||| |||| |.|| || || |||||.|
BPUM_3545 82 ----CTGAAAAAGGCGAAAAGTAAGG---TCGA---ACGTGAACAAGATG 121
BSNT_05524___ 122 AGGC--AATCA---CTG----AAATCAA--AG--AAA--TTGTGAAACC- 155
.||| ||.|| ||| ||||||| || ||| |||.| |||
BPUM_3545 122 CGGCAGAAACAGACCTGAAGCAAATCAAGCAGCCAAAGCTTGGG--ACCT 169
BSNT_05524___ 156 ---GGAATTGGGCAAGCATTGGACGGGAACAAAAGCCGATGATTTCGACA 202
|||| |.|.||.| .||||| |.||||||.|
BPUM_3545 170 CTTGGAA---------------AGGTGAGC-GAAGCC-AAGATTTCAA-- 200
BSNT_05524___ 203 AGGGAAGAGAAGAGGCGAAATCGGAAGC-----ATCC-------AAGATT 240
|..|||| |||||| ||||| ||.| |.||||
BPUM_3545 201 ----ATCAGAA----CGAAAT--GAAGCCCATGATGCGTTGCAAACGATT 240
BSNT_05524___ 241 GTGAATGATAAATA-TAACGAGTATATG----GCTTCG-ATTCAAAGCAA 284
|||||.|||||.|| ..||| .|||.|| ||.||| |||||||
BPUM_3545 241 GTGAACGATAAGTACCCACG-CTATGTGAGCCGCATCGAATTCAAA---- 285
BSNT_05524___ 285 AATATTCTGGCTTGAG-AC---AGAGAAATTTGAGCTGAATTTGACAAAA 330
||| || || ||| |||||| ||||
BPUM_3545 286 ---ATT--------AGTACGTTAGA--------AGCTGA-----ACAA-- 309
BSNT_05524___ 331 AGTGCAGCG------------AATGCC---GCAGGCGAC------CTTCT 359
|||||| |.|.|| ||.||.||| |.|||
BPUM_3545 310 ---GCAGCGTTATCCTTTGCCAGTTCCCTAGCTGGAGACGCCGCACGTCT 356
BSNT_05524___ 360 TGCT---AAAGGAGAAGATTTCGTAGAAGAAGCAGGAAGACAAATTAGTA 406
|||| ||||||||||| ||.|| .|.||||.|.||||....|.
BPUM_3545 357 TGCTGAAAAAGGAGAAGA---CGCAG----TGGAGGACGCCAAACGCTTG 399
BSNT_05524___ 407 AACT-AAAATGGTGGTGA--------- 423
|.|| ||||...|||.|.
BPUM_3545 400 ATCTCAAAAGCATGGAGCAGCTTATAA 426
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