Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03464 and BPUM_3532
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:59
# Commandline: needle
# -asequence dna-align/BSNT_03464___ribD.1.24716.seq
# -bsequence dna-align/BPUM_3532___ribD1.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03464___ribD-BPUM_3532___ribD1.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03464___ribD-BPUM_3532___ribD1.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03464___ribD
# 2: BPUM_3532___ribD1
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1249
# Identity: 691/1249 (55.3%)
# Similarity: 691/1249 (55.3%)
# Gaps: 320/1249 (25.6%)
# Score: 1571.0
#
#
#=======================================
BSNT_03464___ 1 ----------ATGGAAGAGTATTATATGAAGCTGGCCTTAGATCTTGCGA 40
|| |||...||||||||.| |||..||||..|
BPUM_3532___r 1 TTGCCACATCAT----GAGCGATATATGAATC------TAGCACTTGAAA 40
BSNT_03464___ 41 A-GCA-GGGC----GAAGGACAGACCGAAT---CCAATCCGCTCGTCGGC 81
| ||| |||| .||||.||||| || |.||.|||||||||||.
BPUM_3532___r 41 ATGCACGGGCAATGAAAGGTCAGAC---ATCTCCAAACCCGCTCGTCGGG 87
BSNT_03464___ 82 GCTG---TTGT-CGTAAAGGACGGACAAATTGTCGGAATGGGCGCCCATT 127
|||| |||| || |.||.|.| |||||||.||..|.||.||.||..
BPUM_3532___r 88 GCTGTGATTGTGCG-AGAGAATG---AAATTGTTGGTGTCGGTGCTCACA 133
BSNT_03464___ 128 TAAAATATGGTGAAGCTCATGCAGAAGTTCATGCCATCCATATGGCTGGA 177
|.|||...||||||.|.|||||.|||.|||||||..|..|.|||||.|||
BPUM_3532___r 134 TGAAAGCCGGTGAACCACATGCTGAAATTCATGCACTTAAAATGGCCGGA 183
BSNT_03464___ 178 GCAC-ATGCAGAGGGTGCCGACATTTACGTTACACTCGAACCGTG----C 222
| || |.|||.|.||.|||..||||||.||.||.||.||.||.|| |
BPUM_3532___r 184 G-ACAAGGCAAAAGGAGCCACCATTTATGTGACCCTTGAGCCTTGTTCTC 232
BSNT_03464___ 223 AGCCATTACGGAAAAACACCG-------CCATGTGCAGAA----TTGATT 261
| |||| || ||| ||.|||||.||| |||
BPUM_3532___r 233 A-CCAT---GG-------CCGTACAGGTCCTTGTGCGGAAGCACTTG--- 268
BSNT_03464___ 262 ATCAACTCTGGCATCAAAAGAGTGTTCGTGGCGATGAG----AGATCCTA 307
|.||..|.|||.||.|||..||..|||||||| | .||.||.|
BPUM_3532___r 269 -TGAAAGCAGGCGTCGAAACCGTTGTCGTGGCG----GCTCTTGACCCGA 313
BSNT_03464___ 308 ATCCGCTTGTGGCTGGAAGAGGGATCAGCATGATCAAAGAAGCCGGCATT 357
||||||||||.|||||..|.|||||...|||..|..||||.||.|||||
BPUM_3532___r 314 ATCCGCTTGTCGCTGGCCGCGGGATTGCCATTTTACAAGATGCTGGCAT- 362
BSNT_03464___ 358 GAGGTAAGGGA----AGGCATCCTGGCAGACCAGGCGGAGAGCC------ 397
..|||.|| ||||.|.|| .||.|||| .|.||
BPUM_3532___r 363 ---CCAAGTGATTACAGGCGTACT---TGAACAGG----AATCCATTCTC 402
BSNT_03464___ 398 -TGAATGAAAAATTTCTGCACTTTATGAGG------ACAGGCCTTCCGTA 440
||||||||...|||...||.|||||.|.| ||| ||.|.
BPUM_3532___r 403 ATGAATGAAGTGTTTAATCATTTTATTACGAAAAAAACA------CCTTT 446
BSNT_03464___ 441 CGTCACGCTAAAAGCGGCTGCCAGCCTT-GACGGCAAGATAGC-TACCAG 488
|||.||.||.|||||||.|...| |.|| |||||.||.||.|| | |.|
BPUM_3532___r 447 CGTGACACTCAAAGCGGGTATTA-CATTAGACGGAAAAATTGCGT--CTG 493
BSNT_03464___ 489 C-ACGGGTGACAGCAAATGGATCACGTCAGAGGCTGCAAGACAGGATGCT 537
| |||..|||||||||||||||.||.||.|||.|..|..|..|.||||||
BPUM_3532___r 494 CTACGTCTGACAGCAAATGGATTACATCTGAGACATCCCGTTATGATGCT 543
BSNT_03464___ 538 CAGCAATA----CAGGAAAACACACCAAAG----CATTTTAGTCGGAGTT 579
||.| ||| ||| .|.|||.| .||.||.|||||.|.|
BPUM_3532___r 544 CATC-ATATCCGCAG-------TATCAATGATGCGATATTGGTCGGTGCT 585
BSNT_03464___ 580 GGCACAGTGA---AAGCCGACAATCCGAGCTTAAC---CTGCA--GACTG 621
...||.||.| |.|.|||| .|||.|| ||||| || |.
BPUM_3532___r 586 CAAACGGTTATTCATGACGAC-------CCTTCACTCACTGCACGGA-TT 627
BSNT_03464___ 622 CCGAATGTAACAAAACAGCCGGTTCGGGTCATACTTGATACCGTACTC-- 669
||.|||| ..||.||.|||.|||| |.|||.|...| ||||
BPUM_3532___r 628 CCAAATG---GGAATCATCCGATTCG------AATTGTTTTAG-ACTCAA 667
BSNT_03464___ 670 -----TCGATTCCTGAGGAC-GCTAAAGTGATTTGC---GATCAAATAGC 710
||.|.||| |..||| ||.|| |||...| |||||.||.||
BPUM_3532___r 668 AGCTATCAACTCC-GCTGACAGCAAA---GATCGTCACGGATCAGATGGC 713
BSNT_03464___ 711 GCCGACATGGATTTTTACGACGGCACGCGCAGACGAGGAAAAGAAAAAAC 760
.||.||||||||.|||||.||...||..|||||.|||| ||||||
BPUM_3532___r 714 ACCAACATGGATCTTTACAACAAAACAAGCAGATGAGG------AAAAAC 757
BSNT_03464___ 761 G----GCTTT-----CAGCTTTCGGAGTGAACATATTT---ACACTTGAA 798
| ||||| |||| |||.||.|.|.|.||| ||| ||.
BPUM_3532___r 758 GGGCCGCTTTAGAAGCAGC---CGGCGTCAGCGTCTTTGTAACA---GAT 801
BSNT_03464___ 799 ACCGA---------GCGCATTCAAATTCCCGATGT-TTTGAAGATCCTAG 838
|.||| ||.|.||||| ||.|| .||.|| ||.||.|
BPUM_3532___r 802 AGCGAGACGCGGGTGCCCCTTCAA------GAAGTACTTCAA-ATGCTGG 844
BSNT_03464___ 839 CGGAAGAAGGTATCATGTCGGTGT--------ATG-TGGAAGGCGGTTCA 879
..|||.|| .||||| | ||| |.|||||||| |.
BPUM_3532___r 845 GAGAAAAA-----AATGTC----TCCTCCCTCATGATTGAAGGCGG--CG 883
BSNT_03464___ 880 GC--------TG-TTCACGGAAGCTTTGTCAAAGAA-GGCTG-TTTTCAA 918
|| || |||| |||.| |||| .||.| ||.|..|
BPUM_3532___r 884 GCCAGATCAATGCTTCA-------TTTTT---AGAACAGCAGCTTGTAGA 923
BSNT_03464___ 919 GAAATCA-TCTTCTATTTTGCCCCTAAACTAATCGGAGGAACGCATGCTC 967
.||||.| ||.|.|||.|.||.||||||||.||.||.||||.||.|.|||
BPUM_3532___r 924 TAAATTAGTCATTTATATGGCACCTAAACTGATTGGCGGAAGGCTTTCTC 973
BSNT_03464___ 968 CCAGCTTAATCTCCGGTGAAGG--------TTTTCAAT-----CAATGAA 1004
|...|||..|....||.||||| ||.|.|.| ||.||||
BPUM_3532___r 974 CTTCCTTTTTTGGAGGCGAAGGCATACGTCTTATGAGTGACGCCATTGAA 1023
BSNT_03464___ 1005 --AGATGTCCCCTTATTACAATTCACT-------GATATAACCCAAAT-- 1043
.|||...|.||.|.||.|| .|||| |||||.| ||||
BPUM_3532___r 1024 CTCGATCAGCTCTCAGTAGAA-ACACTAGGGAAAGATATTA---AAATAA 1069
BSNT_03464___ 1044 CGG------CCGTGATATCAAACTGACGGCAAAACCGACAAAGGAATAG 1086
||| |||| .|||||| |.|
BPUM_3532___r 1070 CGGGCTATCCCGT-TTATCAA--TAA----------------------- 1092
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