Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01369 and BPUM_3530
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:58
# Commandline: needle
# -asequence dna-align/BSNT_01369___yfiE.1.24716.seq
# -bsequence dna-align/BPUM_3530.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01369___yfiE-BPUM_3530.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01369___yfiE-BPUM_3530.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01369___yfiE
# 2: BPUM_3530
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1027
# Identity: 536/1027 (52.2%)
# Similarity: 536/1027 (52.2%)
# Gaps: 302/1027 (29.4%)
# Score: 1013.0
#
#
#=======================================
BSNT_01369___ 1 ATGACCAG-CATTCATGAGGA--TACACACATTGGCTATGCCAAACTCAC 47
.||| || ||.| |||||| || |.|||||.|.|..||.|.|.||
BPUM_3530 1 TTGA--AGACAAT--TGAGGAGCTA---AGATTGGGTGTAACAGAATTAC 43
BSNT_01369___ 48 A---ATTCGCAGTCTGGAGCGTTC----GCTTCAGTTCTACTG-TAACGT 89
| || .|||..|.|||||||| .||| .||.|||.| || |
BPUM_3530 44 ATGTAT--CCAGCTTTGAGCGTTCTATACCTT--TTTATACAGATA---T 86
BSNT_01369___ 90 CATCGG-TTTTCAAGTCTTAAAAAAGACGGATCGCCA-AGCTG--AATTA 135
..|.|| |||||.| |.|||.|||||||.||| .||| || || |.||.
BPUM_3530 87 TTTAGGATTTTCTA-TATTAGAAAAGACAGAT-TCCACAG-TGACACTTG 133
BSNT_01369___ 136 ACGGC--TG--ACGGGAAACGCGTACTGCTTATTCTT------GAAGAAA 175
.|.|| || |.|| |||.| |||||| .|||||.
BPUM_3530 134 GCAGCAATGCAAAGG--AACCC---------ATTCTTTTGTTAAAAGAAG 172
BSNT_01369___ 176 ATCCGAGCGCTGTCGTCT--------TGCCTGA--ACGGTCTGTGACAGG 215
|| ||.|.| || .|||||| || |.|.||||
BPUM_3530 173 AT----GCACAG----CTCAAGGAGAAGCCTGATCAC-----GAGCCAGG 209
BSNT_01369___ 216 TCTTTATCACTTTGCGATTCTTCTTCCGGACAGGAAAGAACTTGGG---A 262
.||||||||.|||||..|| ||.||.|..||..||||.|||.|||| |
BPUM_3530 210 ACTTTATCATTTTGCTGTT-TTATTACCTACCAGAAAAAACCTGGGCACA 258
BSNT_01369___ 263 TCGCGCTCGCCCGCCTGATTGAACACGGCATTGCT---ATCGGA-CATGG 308
| .|||.||.|...||||..||.|.|||..|.|| ||.||| || .|
BPUM_3530 259 T--GGCTGGCACATGTGATCAAAAAAGGCTATCCTTTAATTGGAGCA-AG 305
BSNT_01369___ 309 AGACCATGCTGTCAGCGAAGCGCTTTACCTGTCTGATCCTGACGGAAACG 358
.|||||...|.|.||.|||||..||||..|...||||||||||||.|..|
BPUM_3530 306 CGACCACTTTTTTAGTGAAGCCATTTATTTAAGTGATCCTGACGGCATTG 355
BSNT_01369___ 359 GCATTGAAATGTACGCTGACCGCCCCCGCAGCACAT---GGCAGCGTGAT 405
||.|.|||||.||.|||||.|| .||..||.||.| ||.|| ||||
BPUM_3530 356 GCGTAGAAATATATGCTGATCG--TCCTGAGGACGTTTGGGTAG-GTGA- 401
BSNT_01369___ 406 CGGGAAGGA-AACT---ACGTCATGACGACAA--CCGCTGTTGACATTGA 449
|.|.||| |||| |.| ||.||..|| |..||.||| ||.||
BPUM_3530 402 --GCATGGAGAACTGAAAGG---TGGCGGAAATGCACCTCTTG--ATGGA 444
BSNT_01369___ 450 G--GGCCTTCTGGAAGAGGCAG--GAGATGA-GCGGAAAACATCGCTTCC 494
| ||.||.||..||||.||.| ||.|.|| |.||.||..| |||||
BPUM_3530 445 GATGGTCTCCTACAAGAAGCCGCTGATACGACGTGGGAAGGA---CTTCC 491
BSNT_01369___ 495 GAACGATACAATCATCGGACACATTCATCTGCATAT-----CAGTGATTT 539
|...|.|||..|.||.||||||.|.|||.|.|||.| |||
BPUM_3530 492 GGCTGGTACCGTGATGGGACACTTACATTTCCATCTGAACCCAG------ 535
BSNT_01369___ 540 GAAAGAAGCAAAGGCGTTTTAT-ACAGATGTACTGGGCTTTGACATTGTC 588
|||||||..|..|.|||||| .|| ||...||.||.|||.|.|||
BPUM_3530 536 --AAGAAGCTGATTCCTTTTATGTCA-ATACGCTCGGTTTTCATATT--- 579
BSNT_01369___ 589 GGAAACTATGCGGGCATGTCCGCC-------CTCTTCGTTTCAGCCGGGG 631
.||| .||| |||.|| .|.||..|..||||.||.|
BPUM_3530 580 CGAA-------TGGC---TCCACCAGCAAGTGTATTTATCGCAGCTGGTG 619
BSNT_01369___ 632 GGTACCACCATCATATCGGCTTAAA--CAT------TTGGGCG------- 666
.||||||||||||..|.|.|||.|| ||| .||||||
BPUM_3530 620 TGTACCACCATCACCTTGCCTTTAATGCATGGGGACGTGGGCGAAAGGGA 669
BSNT_01369___ 667 ---------------------GGA---AGAA---ATGCGC-CGCCTAAAC 688
||| |||| ||.|.| || ||..|
BPUM_3530 670 GCCATTGATCCACGTTTTTCAGGAATTAGAAGCTATACACTCG--TATTC 717
BSNT_01369___ 689 CGACAAATGCCAGCGGACTAGATTATTATACTGT-TGTCCT-----GCCT 732
|.||||..| ||.||| |.||.|| .|||.| ||||
BPUM_3530 718 CCACAAGAG---GCAGAC---------AGACAGTCCGTCGTTGAGCGCCT 755
BSNT_01369___ 733 CACCAAGAGGAGCTGG------------ATTTGGTGGCAAACCGAGT--C 768
.||.|| |||.|| |...|.|||.||| ||| |
BPUM_3530 756 AACAAA----AGCAGGCACTCCAGTGAAAACAGTTGGGAAA---AGTAAC 798
BSNT_01369___ 769 AAA----------CA--TGCCGGGTATTC-------------GATTGAAG 793
.|| || ||.|| ||| ||||||||
BPUM_3530 799 GAATTCGTTGATCCATTTGGCG----TTCTCGTTCGTTTACAGATTGAAG 844
BSNT_01369___ 794 AGACGGA-AAACAGCTTTCGTGTGAAAGACCCTGTTTCCGGCGC-CTATA 841
|.||.|| ||| ||||| .||.|| ..|||
BPUM_3530 845 AAACAGACAAA-------------AAAGA---------AGGTGCAGAATA 872
BSNT_01369___ 842 T---------TACATTTGTGAT-TTAA 858
| .||| ||| ||||
BPUM_3530 873 TGGACAAACACACA-----GATCTTAA 894
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