Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05922 and BPUM_3514
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:29
# Commandline: needle
# -asequence dna-align/BSNT_05922___sigY.1.24716.seq
# -bsequence dna-align/BPUM_3514___sigY.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05922___sigY-BPUM_3514___sigY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05922___sigY-BPUM_3514___sigY.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05922___sigY
# 2: BPUM_3514___sigY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 608
# Identity: 353/608 (58.1%)
# Similarity: 353/608 (58.1%)
# Gaps: 148/608 (24.3%)
# Score: 970.0
#
#
#=======================================
BSNT_05922___ 1 TTGGATACACAAGAAGAACAGCGGC-----TGATACAGCAGGCGAAAGAG 45
||||| .||.|.||| ||.|.| ||||.||||.|||.|||.||
BPUM_3514___s 1 TTGGA---GCAGGCAGA--AGAGACATTATTGATTCAGCGGGCAAAACAG 45
BSNT_05922___ 46 GGAAACGACGAGGCGTTTACAGCCCT-TTTCCACTATCACTATT-CTTTC 93
||..|.||.|..||.||||||||||| |.||..| ||||.|||| |||||
BPUM_3514___s 46 GGGGATGATGCTGCATTTACAGCCCTATATCGTC-ATCATTATTCCTTTC 94
BSNT_05922___ 94 -------TTATATAAATACTTGTTAAAGCTTTCCCTTCACCCCGATCT-- 134
|||||||| |.|||||..|||||||.|..||.||
BPUM_3514___s 95 TTTACCGTTATATAA--------TGAAGCTCACCCTTCAACAAGAGCTTG 136
BSNT_05922___ 135 CAGCGAGGAACTTGTTCAGGAAACCTTTCTGAAAGGGTACA--------- 175
|| ||.|||.||.|.||.|||||..|.|||||||.|||||
BPUM_3514___s 137 CA--GAAGAAATTATGCAAGAAACGATGCTGAAAGCGTACATGAAACTCT 184
BSNT_05922___ 176 -TCCATTTA-AGAAGCTTTCAGGGCCGTTCAAAATTCTCCACGTGGCTGA 223
|.|||||| ||.||.|| |.|| ||||||.||.|||||.|
BPUM_3514___s 185 CTTCATTTAGAGGAGATT-------CCTT----ATTCTCAACATGGCTCA 223
BSNT_05922___ 224 TCTCCATTGCATCGCGGCTCTATCTCGATCACCAGAAAAAGAGAAA---- 269
|.|||||||||||..|.|..|.|.|.|||||||||||.||.|||||
BPUM_3514___s 224 TATCCATTGCATCTAGACAATTTTTGGATCACCAGAAGAAAAGAAAACGT 273
BSNT_05922___ 270 --------GAGAGAATGGAAACGG--AATCAGACAGTTACGGAGGAAACA 309
|||.||| ||||| || |||| |.||.||.
BPUM_3514___s 274 GAACAATTGAGGGAA-GGAAA-GGCAAATC------------AAGAGACG 309
BSNT_05922___ 310 ATCCGCAAGATCAAGTGGGACGTGTCGGCGAAAGGGGCAGA-GTGGAGCG 358
||.|||....|.||.||||| |..||.||.||||||.||.| .|||..||
BPUM_3514___s 310 ATGCGCCGTTTTAAATGGGA-GATTCAGCAAAAGGGCCATACTTGGCACG 358
BSNT_05922___ 359 AAACGCTCGATCTGTTTTCAAAGCTGGA--CCCTAAAC--------TGCG 398
| |||.|| ||| |.|||||| .||.
BPUM_3514___s 359 A-------GATGTG-----------GGATGCTCTAAACGAATTGAAGGCT 390
BSNT_05922___ 399 CA--------CACCAGTTTTATTAAGGC---ATTACTACGGCTATACCTA 437
|| |.||..||.|.|| || ||||.||.||||.|||.||
BPUM_3514___s 391 CAGGAGAGAGCGCCGATTATTTT---GCACTATTATTATGGCTTTACTTA 437
BSNT_05922___ 438 CGCCGAAATCGGGATGATGCTTCAA--------ATCAAAGAAGGCACTGT 479
..|.||.|| |||||||| ||.|.||||||||||||
BPUM_3514___s 438 TCCAGAGAT--------TGCTTCAATGCTCGGTATGAGAGAAGGCACTGT 479
BSNT_05922___ 480 AAAGTCCAGAGTTCATAAAGGGCTCCAGCAAATCAGAAAGGAGTGGGACG 529
.|||||.||.||||||.|.|||.|..||.||||..||||||||||| .
BPUM_3514___s 480 GAAGTCGAGGGTTCATCATGGGTTAAAGAAAATTCGAAAGGAGTGG---T 526
BSNT_05922___ 530 ATGAATAA 537
.|.||
BPUM_3514___s 527 CTTAA--- 531
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