Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05907 and BPUM_3510

See Amino acid alignment / Visit BSNT_05907 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:28
# Commandline: needle
#    -asequence dna-align/BSNT_05907.1.24716.seq
#    -bsequence dna-align/BPUM_3510___yxzF.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05907-BPUM_3510___yxzF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05907-BPUM_3510___yxzF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05907
# 2: BPUM_3510___yxzF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 196
# Identity:      80/196 (40.8%)
# Similarity:    80/196 (40.8%)
# Gaps:          92/196 (46.9%)
# Score: 212.0
# 
#
#=======================================

BSNT_05907         1 ATGTTTAAGGAAGAGGCAATCAGGGGAATGGTTGAGAAAAAAGAAGGGAG     50
                                                                       
BPUM_3510___y      0 --------------------------------------------------      0

BSNT_05907        51 AATCGGAGCTTTGAAAAAGATG-----ATCAAAACCGTTATCAAATGGGC     95
                               .||||||| |||     |.||||    ||.|.||||||||
BPUM_3510___y      1 ----------ATGAAAAA-ATGGCTGAAACAAA----TTTTTAAATGGGC     35

BSNT_05907        96 GCCGGTCATTTACCCGATTGTTCGAAAAATCAT-GAAGGATCGCAAGGTG    144
                     .||.||.|||||.||..|.||..||||||| || .||.||.||.||.|..
BPUM_3510___y     36 ACCTGTGATTTATCCAGTGGTGAGAAAAAT-ATATAAAGAGCGGAAAGCA     84

BSNT_05907       145 TGTAAACAAAAGAATATGTC----CGCATCTAGAACAGCCGGCTGA    186
                     |.|||||          |||    ||.||      |||||||.|.|
BPUM_3510___y     85 TCTAAAC----------GTCGTAACGTAT------CAGCCGGATAA    114


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