Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05906 and BPUM_3507
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:28
# Commandline: needle
# -asequence dna-align/BSNT_05906___licR.1.24716.seq
# -bsequence dna-align/BPUM_3507.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05906___licR-BPUM_3507.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05906___licR-BPUM_3507.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05906___licR
# 2: BPUM_3507
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2168
# Identity: 1214/2168 (56.0%)
# Similarity: 1214/2168 (56.0%)
# Gaps: 502/2168 (23.2%)
# Score: 2883.0
#
#
#=======================================
BSNT_05906___ 1 ---------------------------------------ATGGCGGCTGA 11
|||||.||.||
BPUM_3507 1 ATGCTGAGTAAAAGACTGGCGCACATTTTAAGTCAGTTAATGGCAGCGGA 50
BSNT_05906___ 12 AGCCCCGGTGACAAG---TTCGTTTTTTG-CGGCGCAATTAAACGTAACG 57
..|||||.|.||||| |.||.|||.|| |.|| |||.|.||.||.
BPUM_3507 51 GACCCCGCTCACAAGCGCTGCGCTTTCTGTCAGC----TTACAAGTGACA 96
BSNT_05906___ 58 ATGCGGACAGCCCGCAATGATATAAAGGAACTTCAAG---GTGT-GCT-- 101
|..||.||.|..||.|..||.||.||||||||..|.| ||.| |||
BPUM_3507 97 AGCCGCACCGTTCGTACAGACATCAAGGAACTGAACGACCGTCTCGCTCC 146
BSNT_05906___ 102 -----AAGCGGCCACGGTGCCTTTGTACAATCGGTAAGAGGCTCCGGCTA 146
||||||| ||||..|.|.||..||||..|.||.||
BPUM_3507 147 TTACCAAGCGGC-----------TGTATCAGCTGTTCGAGGAGCTGGTTA 185
BSNT_05906___ 147 CAAGCTCCGCATTGAT-GACGAGCAAGTATTCAGAACACTGC-------- 187
..|||| .||||| .|||| |.|||| |||
BPUM_3507 186 TGAGCT----GTTGATCAACGA--------TGAGAA---TGCCTTTCGCC 220
BSNT_05906___ 188 ------TGCAAGATGTATTT----CAGCAAAAAAAGGGCCTGCCGGTATT 227
||.||||.| |..| |||.||.||..| |||.|.||..|
BPUM_3507 221 GTTTTATGAAAGAAG-AGGTCGAACAGGAAGAACCG---CTGGCTGTTCT 266
BSNT_05906___ 228 GCCGGAGGAGAGAAT--GGCCTATCTTATGAAACGTCTGCTGCTGGCGGA 275
||||||||||.|..| ||..|||.||| |||...|||||.||.||.||
BPUM_3507 267 GCCGGAGGAGCGCGTTCGGTTTATTTTA--AAAAAACTGCTTCTTGCAGA 314
BSNT_05906___ 276 CCATTATCTCAAGCTCGATGAACTTGCTGAAG-AACTATTTATCTCAAAA 324
...||||.|.||.||.||.| |.||.|.|.|| |.||.||||||...|||
BPUM_3507 315 GTCTTATGTGAAACTGGAAG-ATTTACAGGAGCAGCTGTTTATCAGTAAA 363
BSNT_05906___ 325 TCTAC----ACTCCAAACGGATTT--AAAGGAAGTAAA----------GA 358
||.|| |.| ||| |||.| ||.|| ||.|| ||
BPUM_3507 364 TCGACGATGAGT---AAC-GATATGAAATGG--GTCAAACGCAAGCTTGA 407
BSNT_05906___ 359 AACGTCTGCTGCCTTACCGCATCGTCATGGAAACACGTCCGAATTACGGC 408
|.|.|.||.| .||..|| |||||.||...||||||.|.|||
BPUM_3507 408 ACCCTTTGAT---CTAAAGC-------TGGAAGCAAAGCCGAATAAAGGC 447
BSNT_05906___ 409 T------TCAAGCTGCGCGGGGA--CGAGGTGCAGATGAGGTACTGCATG 450
| |||| .||| .|||.||.|.||..|.||.||.|||
BPUM_3507 448 TGCCGGATCAA--------AGGATCGGAGATGAAAATCCGTTATTGTATG 489
BSNT_05906___ 451 GCGGAGTACATTGTT-GATGAAAG---------AGAAACGGAGATAGATG 490
.|.||.|| .||.|| .|||||.| ..|||| ||||
BPUM_3507 490 TCAGAATA-TTTATTCAATGAACGCCGTTCCTACCAAAC-------GATG 531
BSNT_05906___ 491 TTTTAAATGAA-AAGGC--TGA-TATTTTGCCAAAAGAAGA-----AATT 531
.|||| |..|| ||| .||||||||||||.|.|| ||||
BPUM_3507 532 ------CTGAATACAGCAGTGACCATTTTGCCAAAACATGAACTGGAATT 575
BSNT_05906___ 532 GAGATCATCCGTTCCG----CCATC-TTG---AAAAAAATGAAAAACGAC 573
|| |||.| |.||| ||| |.|..||||||.||.||
BPUM_3507 576 GA---------TTCAGAAAACAATCATTGATTATATCAATGAAGAAAGA- 615
BSNT_05906___ 574 CGCATCCCTCTGTCCAACATGGGACTGAATAACCTCATTATCCATATTGC 623
||...|||.||..||||..|..|||||||..|.||..|.|||.||||
BPUM_3507 616 ---ATGAATCTATCAGACATTTGCATGAATAATTTAATCGTTCATGTTGC 662
BSNT_05906___ 624 TATCGCCTGTAAACGGATTAGA-ACGGAAAACTATGTATCTCTTTTCCCG 672
.||.|||||.|||||||||||| |||| |||||||||||||.||||.||.
BPUM_3507 663 GATTGCCTGCAAACGGATTAGACACGG-AAACTATGTATCTGTTTTGCCA 711
BSNT_05906___ 673 AAAGATATGGATCATATCCTGCATCA-----AAAGGAGTACCAGGCTGCA 717
.||||.||..||.|.||.| || ||||||.|||.|||..||
BPUM_3507 712 GAAGAAATCAATGAAATTC-----CACGGGCAAAGGAATACAAGGTCGC- 755
BSNT_05906___ 718 GAAGCCATCGTAAAAGAGCTGGAA--TC-------AAAGCTTTCCGTTAC 758
||| ||||..|.||||| || |..|||...|||..|
BPUM_3507 756 GAA--------AAAAATGGTGGAACGTCTTGAAGGACTGCTGGACGTCTC 797
BSNT_05906___ 759 ATTTCCGAAAGAAGAGACGGCCTACATCACCATGCATCTCCTTGGCAC-- 806
.|||||..||||.||||..|.|||.|||.||||.|||.|..|.||.||
BPUM_3507 798 TTTTCCACAAGAGGAGATCGTCTATATCGCCATTCATTTGTTAGGAACAG 847
BSNT_05906___ 807 --AAAA------------------CGA-ATGACACAATCACAATGCGGA- 834
|||| ||| ..|.||.||.||.|.||.|||
BPUM_3507 848 CTAAAATGGTGCAGTCCTTTTCATCGAGCGGTCAAAAACAAATTGTGGAT 897
BSNT_05906___ 835 GAGGACACATTTTCAATAGAAGAGGAAACC-----GATCAGCTGACACTT 879
||.||||| ||| || |.||||||
BPUM_3507 898 GATGACAC-------------GAG----CCGTCTTGTTCAGCT------- 923
BSNT_05906___ 880 GCCATGATCAAAGCTGTTGATCGTGAACTGAAGCTTGGCATCCTGCATGA 929
.|||.|.|||||..||||.|...||.||.|||| |.||...|||.||
BPUM_3507 924 --TATGTTGAAAGCGATTGACCAAAAATTGCAGCT--GGATTTAGCAGGA 969
BSNT_05906___ 930 CA-----AAGAGCTGAAAATCGGCTTGGCC-----CTGCATATGAAGCCG 969
.| ||..||||| ||||.| |||||..|.|||||.
BPUM_3507 970 GATGCGGAATTGCTGA--------TTGGGCTCAGTCTGCACTTAAAGCCA 1011
BSNT_05906___ 970 GCGATCA---GCCGCAACCGATACGGCATGAATCTT-CGAAATCCGATGC 1015
||.||.| |..|.|| |||.||.||||| ||| .||||||||||||
BPUM_3507 1012 GCCATGACTCGGTGTAA---ATATGGGATGAA-CTTAAGAAATCCGATGC 1057
BSNT_05906___ 1016 TGGCAGCGATCAAGGAACATTATCCACTCGCTTTTGAAGCCGGGAT---- 1061
|||..|..||.||||.....||||||||.|||||||||||.|||||
BPUM_3507 1058 TGGATGAAATAAAGGCGGGGTATCCACTTGCTTTTGAAGCAGGGATTGTC 1107
BSNT_05906___ 1062 -CATTGCCGGAATCGTGATAAAGGAACAAACGGG--TATTGAG-ATTCAT 1107
| |.||||| ||.||..|.|||.|.||||| ||| | ||.|||
BPUM_3507 1108 GC-TAGCCGG----GTAATTGAAGAAGAGACGGGGTTAT---GTATCCAT 1149
BSNT_05906___ 1108 GAAAACGAAATTGGATATTTGGCTCTCCACTTTGGCGCCGCGATTGAACG 1157
||.||.|||||.||.|||.|.||.||.||.|||||.||.||..|.||.||
BPUM_3507 1150 GAGAATGAAATCGGCTATATCGCGCTTCATTTTGGTGCGGCTTTAGAGCG 1199
BSNT_05906___ 1158 AAAAAAAACAGAAAGCCCGCCGAAACGCTGTATCATTGTATGCGCATCGG 1207
||.|||||..||.|..||||||||.||.|||.|||||||.||.|||||.|
BPUM_3507 1200 AAGAAAAATGGAGATTCCGCCGAAGCGATGTCTCATTGTTTGTGCATCTG 1249
BSNT_05906___ 1208 GAGCCGGAAGCGCCCAGCTT-CTGCGCGAAAAACTGCGTTCCCATTTCGG 1256
|.||.||.||.| |.||.|| ||||..||...|.||||.||.||.||.||
BPUM_3507 1250 GTGCAGGGAGTG-CGAGGTTGCTGCAGGATCGATTGCGGTCACAATTTGG 1298
BSNT_05906___ 1257 ---CAAGCGGCTCGATATTCTT-GGAACGGCTGAG---TATT-------- 1291
.||| |.||.|.|||| ||.||.||.||| ||||
BPUM_3507 1299 GTCAAAG----TTGACAATCTTAGGCACAGCAGAGCTTTATTCGCTTCCG 1344
BSNT_05906___ 1292 -ATAGTCT-TGATCAAATGTCCTACGAATCAATTGATTTTGTCATCAGTA 1339
|| |||| | |.|.|||.||| |.|.||||||.|..||.|.||.
BPUM_3507 1345 CAT-GTCTCT--TTACATGCCCT-----TGATTTGATTATTACAACGGTC 1386
BSNT_05906___ 1340 CC-ATTCCGATTAAAAAAGAGCTCCCTGTACCAGTACTGAAGGTTAACAC 1388
|| ||||.||| .||..||||..|.||.||..|..|.||.||.||
BPUM_3507 1387 CCGATTCAGAT------GGATATCCCGATTCCCGTCATACAAGTCAATAC 1430
BSNT_05906___ 1389 CATCTT---AGGCGGAACTGACTTTACAAAAAT---AGAATCTATTCTGA 1432
.||.|| |||||| .||||||..|||||| ||||.|..|...||
BPUM_3507 1431 TATTTTGGGAGGCGG---CGACTTTTTAAAAATTGAAGAAGCCCTGACGA 1477
BSNT_05906___ 1433 GTGATGAAAAGGAAAAA---GCCAATCGCTACCTAAAAAAAGAACTCGTT 1479
||||...||.||..|.| |||..||..||..|.|||||.|||.|.||.
BPUM_3507 1478 GTGAAACAAGGGTGACATTGGCCTCTCAATATATGAAAAAGGAATTGGTC 1527
BSNT_05906___ 1480 TTT------------TTTCAGGAGGATCTGCGCTCAAAAGAAGAAGTGAT 1517
||| ||||| ..||||.|||||.||.||
BPUM_3507 1528 TTTACAAAGCGTGCCTTTCA------------AACAAAGGAAGAGGTCAT 1565
BSNT_05906___ 1518 -TCAATTTTTAGGGC--AGAAAGCGGTCGA-ATGCGGCTTTGC-----CA 1558
.|..||.||| | |.||||...|||| ||| ||.||.|| ||
BPUM_3507 1566 CGCCTTTCTTA---CAAAAAAAGTCATCGATATG-GGATTAGCACCAGCA 1611
BSNT_05906___ 1559 GAGAAGAAATCATAGA--TTCCATTTTTGAAAGAGAAGA--CATGTCGCC 1604
||| |.||.| |||..|..|.||||||||||| | || |.||
BPUM_3507 1612 GAG-------CTTACACCTTCTGTGATGGAAAGAGAAGAGGC-TG-CTCC 1652
BSNT_05906___ 1605 AACGTGTTTTGGCAATCTTGTTGCCATCCCGCACCCGCTTGTTCCGCAGA 1654
.||.|..||.||..||..|...|||||.||||||||..|....||||.||
BPUM_3507 1653 TACATCCTTCGGGCATTATACAGCCATTCCGCACCCAATGACGCCGCTGA 1702
BSNT_05906___ 1655 C-GAAAACAACGTTTTGGGCTGTTTGTACGCTCAAAAAACCGA-TCGATT 1702
| |||.| .|||||||||||..|.|||||.||..||||||||| |..||.
BPUM_3507 1703 CAGAAGA-GACGTTTTGGGCGATCTGTACACTAGAAAAACCGATTATATG 1751
BSNT_05906___ 1703 GGGAGAGTCAGCGAGTTCAATTTGTCTGTTTGCTTTGTGTCGAAAAGGAG 1752
||||||| .|...|||||||||||||||.|||||||||||||||||.|||
BPUM_3507 1752 GGGAGAG-AAAAAAGTTCAATTTGTCTGCTTGCTTTGTGTCGAAAAAGAG 1800
BSNT_05906___ 1753 AA--CAAAGCTGACTTGCAAAGCATGTA---TAAACT------GCTTG-G 1790
|| |||| .|||||..||.|.||||| |..||| ||||| |
BPUM_3507 1801 AATGCAAA--AGACTTAAAAGGGATGTACCGTCTACTGGGTGAGCTTGTG 1848
BSNT_05906___ 1791 CAGCATTTTGGA------TGA----CCCGGCGGCGGTGAACCAGCTGGTC 1830
|| ||.|.||.| |.| |.|..||.|.||||..||..||...
BPUM_3507 1849 CA-CAATGTGAAATTCATTCAGCACCTCATCGCCTGTGATACATTTGAAG 1897
BSNT_05906___ 1831 AAATGCCGTTCG-TATCA--------AGAGCT--TTCGGATGTGTTTGAC 1869
|.|||| ||| ||||| |.|||| ||||.|
BPUM_3507 1898 ACATGC---TCGATATCATGTATAAGAAAGCTCCTTCGTA---------- 1934
BSNT_05906___ 1870 CAAAAAATGCTGAGCTGA 1887
.||.|||.|..||
BPUM_3507 1935 -CAAGAATTCATAG---- 1947
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