Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05901 and BPUM_3504

See Amino acid alignment / Visit BSNT_05901 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:28
# Commandline: needle
#    -asequence dna-align/BSNT_05901___licA.1.24716.seq
#    -bsequence dna-align/BPUM_3504___licA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05901___licA-BPUM_3504___licA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05901___licA-BPUM_3504___licA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05901___licA
# 2: BPUM_3504___licA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 359
# Identity:     236/359 (65.7%)
# Similarity:   236/359 (65.7%)
# Gaps:          58/359 (16.2%)
# Score: 760.0
# 
#
#=======================================

BSNT_05901___      1 GTGAATGAGGAAATGGAACAAATCATTTTTCAAATCATCCTTCACGGAGG     50
                         ||  |||||||||||||||..|.||||||.|||||.|.|||||.||
BPUM_3504___l      1 ----AT--GGAAATGGAACAAATTGTGTTTCAACTCATCTTACACGGCGG     44

BSNT_05901___     51 AAACGGTAGAAGCTCCGCAATGGAGGCCATTGCCGCTGCGAAAAGC--GG     98
                     .||.||.||||||||.||.||||||||||||.|  .||.|.|||||  ||
BPUM_3504___l     45 GAATGGCAGAAGCTCAGCGATGGAGGCCATTAC--ATGTGCAAAGCAAGG     92

BSNT_05901___     99 CGACGCAGAAGAAGC---GCGGAAA-------AAGCTTCAAGACGCTGCT    138
                     ..||...||.||.||   ||..|||       |||| .||||||||    
BPUM_3504___l     93 AAACTTTGATGAGGCGAAGCTAAAATTGCAGGAAGC-ACAAGACGC----    137

BSNT_05901___    139 GAAGAATTGTCAA---AAGCCCATCATTATCAGACAGAGCTGATCCA---    182
                             ||.||   |.||.|||||....||.||||||||||||||   
BPUM_3504___l    138 --------GTTAAATGAGGCGCATCACGCACAAACAGAGCTGATCCAAGG    179

BSNT_05901___    183 --AAATGAAGCGGGCGGAGAAAAGACGGAAATGACGCTTCTGATGGTTCA    230
                       ||||.|     |.|||||||||||.||.||.|..||..|.|||.|.||
BPUM_3504___l    180 AGAAATTA-----GAGGAGAAAAGACCGACATCAGTCTCTTAATGATCCA    224

BSNT_05901___    231 TGCACAGGATCATTTAATGAATGCAATGACAGTGAAGGATATGGCTGCAG    280
                     |||||||||||||.|.|||||.||||||||.||.|||||..|.||.||.|
BPUM_3504___l    225 TGCACAGGATCATCTCATGAACGCAATGACTGTCAAGGAGCTTGCGGCGG    274

BSNT_05901___    281 AGATCATTGAGTTATATGAAAAAATCACCGAGCAAAGGGGAG----CAAG    326
                     |.|||||.|||.|..||||||||||.|   |||||...||||    ||  
BPUM_3504___l    275 AAATCATCGAGCTCCATGAAAAAATGA---AGCAACTCGGAGGTGTCA--    319

BSNT_05901___    327 CAT--ATGA    333
                      ||  ||||
BPUM_3504___l    320 -ATTCATGA    327


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