Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05566 and BPUM_3499
See
Amino acid alignment /
Visit
BSNT_05566 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:11
# Commandline: needle
# -asequence dna-align/BSNT_05566___ywoF.1.24716.seq
# -bsequence dna-align/BPUM_3499.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05566___ywoF-BPUM_3499.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05566___ywoF-BPUM_3499.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05566___ywoF
# 2: BPUM_3499
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1678
# Identity: 889/1678 (53.0%)
# Similarity: 889/1678 (53.0%)
# Gaps: 521/1678 (31.0%)
# Score: 2096.5
#
#
#=======================================
BSNT_05566___ 1 ATGAGAAA------AT----GGTATTTTA-TTCTTTTGGCGGGTGTTTTA 39
|| |||| || ||||||||| ||.||| |.||.
BPUM_3499 1 AT--GAAACGAGCGATACCAGGTATTTTACTTATTT---------TATTC 39
BSNT_05566___ 40 ACGTCTGTCATCCTC----GCTTTCGTTTATGATAAGACAAAAGCGAATG 85
|.|.|.||||||..| |||.|| ||||| |||
BPUM_3499 40 ATGACCGTCATCAGCTTCGGCTGTC----------------AAGCG-ATG 72
BSNT_05566___ 86 AGGAAGGA-TCTGGGGAT---------------TATCTGTATGTTTCGCT 119
|.|.|||| .||||.|.| |||| |.||..||..
BPUM_3499 73 ACGGAGGAGGCTGGCGCTAAGCAAAGCACAGCCTATC---ACGTAGCGAC 119
BSNT_05566___ 120 AAATGGCAGTGATCAAAATGAAGGAACAAAAGAAAAACCGTTTCGTACAT 169
|||.||.|..|||.||||...||||||.||..|||||||.|||||
BPUM_3499 120 AAACGGAAACGATAAAAACCCAGGAACGAAGCAAAAACCTTTTCG----- 164
BSNT_05566___ 170 TGGCACACGCATCTGAGAA-------------GGCTGCTGCCGGCACAAC 206
|||| ||||.|| |||....|||||.|||||
BPUM_3499 165 -----CACG---CTGAAAAAAGCGGCAAGTATGGCGAAAGCCGGGACAAC 206
BSNT_05566___ 207 TGTCATGATT-CGGGAG----GGCACGTATCATGAGA------------- 238
||| || ||.||| |||||.|||.|.||||
BPUM_3499 207 ---CAT--TTACGTGAGAGGCGGCACATATAAAGAGAAATTGATTGTCCG 251
BSNT_05566___ 239 CCCTTGATGT------AAAGCACAGCGGTACGGACGGAAAGCCTATCACA 282
||.||.|.|| ||||||| |||| ||||
BPUM_3499 252 CCATTCAGGTACAAAGAAAGCAC--CGGT--------------TATC--- 282
BSNT_05566___ 283 TTCCGAAAC-TAT-GAAAATGAAAACGTCGTGATTAGCGGTGAATCCATT 330
||.| ||.| ||| |||||..|||||.| ||.||||||||.|..||..||
BPUM_3499 283 TTTC-AAGCTTATGGAAAAGAAAAACCT-GTTATTAGCGGGGCTTCACTT 330
BSNT_05566___ 331 ACGAACGCTGAATATGAAACA-----CCG-CTTATTCGTATTCACGAT-- 372
| || |.|.||.||.|| |.| ||| .|||||||
BPUM_3499 331 A--AA----GGAAATCAAGCAGATGGCGGTCTT-------GTCACGATCG 367
BSNT_05566___ 373 -----AAACATGACATTGCCATCAGCGGTTTAACAAT--------TCAAG 409
|||..|.|||||.||.|||..|||.|.|||.| |||||
BPUM_3499 368 ATCAAAAAAGTTACATTACCCTCAAAGGTCTGACAGTGGGACATCTCAAG 417
BSNT_05566___ 410 A------------------------TCTTTCTGTTTCATCTGAGGAAGCA 435
| ||..|.| |||||||..|||||||
BPUM_3499 418 ACGAATAAAGAAGACCTGACCCCAGTCGGTAT-TTTCATCAAAGGAAGC- 465
BSNT_05566___ 436 ACTGCTATAGGGATTTATGTATCAGGGTCCAGCAGTCATATTGCCATTAA 485
|||| .||..||||.|.|.|
BPUM_3499 466 ---------GGGA----------------AAGGCGTCAAACTTC------ 484
BSNT_05566___ 486 GGATAATC-ACATCCG-GGGTATTAAGACAACTGCGGATG---------- 523
|| |||.||| |.|||| |||| |.|.||.|
BPUM_3499 485 ------TCAACAACCGAGTGTAT---GACA--TTCAGACGACACACAAAA 523
BSNT_05566___ 524 AAGGAAATGCTCACGGAATCGCAGTTTATGGGAC-----------TGGCA 562
|.||.|||||.|||||.||.||.||.|||||.|| .|||
BPUM_3499 524 ATGGGAATGCGCACGGTATTGCGGTCTATGGAACAAAAGCTCCAGCGGC- 572
BSNT_05566___ 563 GCATGAAAGACATCCAAATC-GAGGACAATACAGTTGAGAAACTGACGCT 611
|||..||||.||..||||| .|||| ||.||.|||||.|||.|.|.|||
BPUM_3499 573 -CATTGAAGATATTGAAATCAAAGGA-AACACTGTTGAAAAATTAAAGCT 620
BSNT_05566___ 612 TGGAGCGAGTGAAGCAGTTGTGCTGAACGGTAATATCGACGGCTTCAC-- 659
|||....||||||||..|||||||.||.||.|| |.||||
BPUM_3499 621 TGGCTTCAGTGAAGCGCTTGTGCTCAATGGAAA---------CGTCACTA 661
BSNT_05566___ 660 AGTTGCAGGCAATGT------------GGTCCGCAACAATAACAACATCG 697
||||.| .||| |||.|||.|||...|.||.||.|
BPUM_3499 662 AGTTTC-----GTGTGACACATAACACGGTTCGCCACACGGATAATATAG 706
BSNT_05566___ 698 GGATTGATCTAATTGGTTATGAGGGAACCGCGGA-----TAAAA---ACG 739
|.||||||.|||||||||.||| ||||...|.| ||||| |||
BPUM_3499 707 GTATTGATTTAATTGGTTTTGA--GAACGTAGCACCTTCTAAAAAGTACG 754
BSNT_05566___ 740 ATTACGTGCGAAACGGAATCGT----AGAAAACAA----TAC-AGTTTAT 780
||.|.||..|||||||..|.|| || |||||| ||| ||.|||
BPUM_3499 755 ATCAAGTCAGAAACGGTGTTGTATCAAG-AAACAAAGTGTACGAGATTA- 802
BSNT_05566___ 781 CAAAACTCGACT-TACGGCAATCCTGCTTATGGAGATGA-ATACTCAGCG 828
|||.| || ||.|||||.||.|||||..|.|| || |||.||.
BPUM_3499 803 -------CGAGTGTA-GGAAATCCAGCCTATGGCAAAGACAT-CTCCGCT 843
BSNT_05566___ 829 GGCGGGATTTATGTCGATGG-----AGGACA-CAAGATCGAAATTAAGAA 872
||.||.||||||||.||||| |||||| ...|||.||...|||.|.
BPUM_3499 844 GGTGGCATTTATGTGGATGGCGGGAAGGACATTGTGATTGACCATAATAT 893
BSNT_05566___ 873 CAACACAGTTTACGATAACGATATTGGGATTGAAGCAACGTCTGAACACA 922
| ||||| |.|| ||.||..||||.|||||||..||...||||||.|
BPUM_3499 894 C-ACACA--TCAC---AATGACCTTGGAATTGAAGTCACAAGTGAACATA 937
BSNT_05566___ 923 AAGGAAAGTATGCAAATGCCATTCAGAT--------CACTG---ACAACA 961
|||||| ||||| .||||| ||.|| ||||..
BPUM_3499 938 AAGGAA-------AAATG----GCAGATCGTATTCGCATTGAACACAATC 976
BSNT_05566___ 962 AAGTGTA---CAACAATGCG-TACACCGGTATTTCAATCGGAGGATATGA 1007
||||||| .||| || ||.||.||.||||||||.||.||.|||||
BPUM_3499 977 AAGTGTATTTGAAC----CGTTATACAGGCATTTCAATTGGCGGTTATGA 1022
BSNT_05566___ 1008 CAAAAAGCGGGGCGGCACCAGCAAT-------TCTCTGATTGCCCGCAAT 1050
.||||||||.|||||.||.|..||| ||||..|| |||
BPUM_3499 1023 TAAAAAGCGAGGCGGAACAACAAATACGACGATCTCACAT-------AAT 1065
BSNT_05566___ 1051 ATTATGTACCGGAATGACACAAAGGGACTGTACGGCGGACAGCTGCTGCT 1100
|||.|.|||...|||||||||...||..|..|.|||||.||..||.||.|
BPUM_3499 1066 ATTTTATACAAAAATGACACAGCTGGCTTAGAAGGCGGCCAATTGTTGAT 1115
BSNT_05566___ 1101 GCAGTA-CGATACGAAAAACAACACAATTGAA-----AAGAATATATTGA 1144
|||.|| |.|..||..| |||||.||| |..|||||..|||
BPUM_3499 1116 GCAATATCAAGCCGTGA------ACAATCGAATCACGAGCAATATCATGA 1159
BSNT_05566___ 1145 CGGCCGGTGATTCCAG-ATTATTTA-TCG-GAAACGATTTTA--CAGAAA 1189
|.||..|||..|| | ||||.||| ||| |||.| |||| .||..|
BPUM_3499 1160 CAGCGAGTGCCTC--GCATTACTTAGTCGTGAATC---TTTATGGAGTGA 1204
BSNT_05566___ 1190 ATGAAGGAAATACGGTCAATCATAACGTGT------ACCACAA-----GG 1228
||.||...||||...||.|..|.|||||.| |||.||| .|
BPUM_3499 1205 ATCAAAAGAATATCTTCCAAAAGAACGTATATGATGACCGCAAAGGTGCG 1254
BSNT_05566___ 1229 AAGCGGATCA-AG----------ACGGCATTTGGATGTGGA-------AA 1260
||| |.|||| || .|||.|..|||| |||| ||
BPUM_3499 1255 AAG-GCATCACAGTGGGTATGGCGCGGGAAATGGA--TGGAGGGCTACAA 1301
BSNT_05566___ 1261 AAGAAAGAATATGATTCATTTTCGTCGTA----TCTAAAAGC-AACA--A 1303
|| |||| ||||||||| .||| |
BPUM_3499 1302 AA-----------------------CGTATCTCTCTAAAAGCGGACAAGA 1328
BSNT_05566___ 1304 AAAACGATCAG-------CAATCCATATATGCCGATCCGATGTTTCGTG- 1345
.|||.|||||| |||||||.| .||.|||
BPUM_3499 1329 TAAAGGATCAGCACACCTCAATCCACA---------------ATTTGTGA 1363
BSNT_05566___ 1346 ATG------AAGCGTCCTATGATTTTTCGTTAGATCCTGA-------TTC 1382
||| || ||||| |||||| ||||| .||
BPUM_3499 1364 ATGAGAAAAAA------TATGA-TTTTCG------CCTGAAGAAGTCATC 1400
BSNT_05566___ 1383 ACCTGCGCGGCCTGTCATTG--AATAA- 1407
||||||...|....||||.| |||.|
BPUM_3499 1401 ACCTGCTAAGAAAATCATCGGAAATTAA 1428
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.