Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05859 and BPUM_3486
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:26
# Commandline: needle
# -asequence dna-align/BSNT_05859___ywbH.1.24716.seq
# -bsequence dna-align/BPUM_3486___lrgA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05859___ywbH-BPUM_3486___lrgA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05859___ywbH-BPUM_3486___lrgA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05859___ywbH
# 2: BPUM_3486___lrgA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 415
# Identity: 270/415 (65.1%)
# Similarity: 270/415 (65.1%)
# Gaps: 59/415 (14.2%)
# Score: 811.5
#
#
#=======================================
BSNT_05859___ 1 ATGAA-------AAAA-----CTG-TTGCTAACCGTTATTCAAATCGCTC 37
.|||| |||| ||| ||||| ||..||||.|| |.
BPUM_3486___l 1 GTGAAATTGCTCAAAACGCCGCTGATTGCT----GTCCTTCAGAT---TA 43
BSNT_05859___ 38 TG---TTATTTATATTTGC----TCGGCTGATTAATTGGGTGACAGCCCT 80
|| ||.|||.|.||||| | ||||.|||..|.|..|.|||.|
BPUM_3486___l 44 TGGCTTTGTTTGTTTTTGCGAAAT----TGATGAATGTGCTCGCGGCCTT 89
BSNT_05859___ 81 TCTTCATATAAATATTCCCGGCAGTATAATAGGGATTGTGATTCTTTTCA 130
|.|.|||.|||..|||||.||||..|||.||||.|||.||.|..|||||.
BPUM_3486___l 90 TTTGCATTTAAGAATTCCGGGCACGATATTAGGCATTCTGGTCATTTTCT 139
BSNT_05859___ 131 CATTATTGCACTTTAACATTA-TCAAGCTT-GAATGGATCGAGCTTGGTG 178
.||||.|.||.|||||.|||| |||| || .|||||||.||.|||||||
BPUM_3486___l 140 TATTACTTCATTTTAAAATTATTCAA--TTAAAATGGATTGAACTTGGTG 187
BSNT_05859___ 179 CAACG--TGGCTTCTCGGGGAGCTGCTTTTATTTTTTATCCCGTCTGCCG 226
| || |||||.|||||.||.|||||..||||.|||||||||||.||||
BPUM_3486___l 188 C--CGTCTGGCTGCTCGGAGAACTGCTACTATTCTTTATCCCGTCCGCCG 235
BSNT_05859___ 227 TCGGAGTGATTGAATACGGAGACATT-ATGTCGAAATTTGGTGTCAGCAT 275
|.||.||.|||||.||.||| ||||| .|.||..|||.||||...||.||
BPUM_3486___l 236 TTGGTGTTATTGATTATGGA-ACATTGCTTTCTCAATCTGGTACAAGTAT 284
BSNT_05859___ 276 TCTGCTTGTTGTCATCATCAGCACGTTTGTCGTGATGGTGTCTACAGGAA 325
|.|.|||||.|||.|..|.||.||.||||||||.|||.|.||.||.||.|
BPUM_3486___l 285 TGTCCTTGTCGTCTTACTGAGTACCTTTGTCGTCATGCTCTCGACTGGTA 334
BSNT_05859___ 326 CGCTTACACAACTCATTGCAAAGAGAAAGGAG---AAAAAGCATACGTGT 372
...|.||.|||.|.|||||.||.||||||||| ||||||| || |||
BPUM_3486___l 335 TCATGACGCAAATGATTGCGAAAAGAAAGGAGCGAAAAAAGC-TA--TGT 381
BSNT_05859___ 373 TCATCGGAATTGTAA 387
|..
BPUM_3486___l 382 TAG------------ 384
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