Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05858 and BPUM_3485
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:26
# Commandline: needle
# -asequence dna-align/BSNT_05858___ywbI.1.24716.seq
# -bsequence dna-align/BPUM_3485___ywbI.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05858___ywbI-BPUM_3485___ywbI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05858___ywbI-BPUM_3485___ywbI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05858___ywbI
# 2: BPUM_3485___ywbI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 924
# Identity: 661/924 (71.5%)
# Similarity: 661/924 (71.5%)
# Gaps: 54/924 ( 5.8%)
# Score: 2265.0
#
#
#=======================================
BSNT_05858___ 1 ATGGATATCCGCCATTTAACATATTTCTTGGAAGTCGCCCGTTTAAAAAG 50
.||||.||..|.|||||||||||||||||.|||||.||..|.||||||||
BPUM_3485___y 1 GTGGACATTAGACATTTAACATATTTCTTAGAAGTGGCAAGGTTAAAAAG 50
BSNT_05858___ 51 TTTTACGAAGGCTTCCCAATCCCTTTATGTTTCTCAGCCGACGATATCAA 100
.||.||.||.||.||.|||||.||||||||.||.|||||.||.|||||.|
BPUM_3485___y 51 CTTCACAAAAGCATCACAATCTCTTTATGTGTCGCAGCCTACCATATCCA 100
BSNT_05858___ 101 AAATGATCAAAAATTTAGAAGAAGAGCTCGGAATTG-AACTGTTTTACCG 149
|.|||.|||||||..|.|||||.||||| .||..|| |..|.|||||.||
BPUM_3485___y 101 AGATGGTCAAAAACCTTGAAGATGAGCT-AGAGGTGCAGTTATTTTATCG 149
BSNT_05858___ 150 AAACGGCAGGCAGGTAGAACTGACTGATGCCGGTCATAGCATGTATGTGC 199
.||.|||||.|||||.|||.||||.|||||.||.||.|..||||||...|
BPUM_3485___y 150 GAATGGCAGACAGGTTGAAATGACAGATGCTGGACAAACGATGTATACCC 199
BSNT_05858___ 200 AGGCGCAG-GAAATCATTAAATCATTTCAAAACCTGACGTCAGAATTAAA 248
||||| || |||||||...|||||||||||||..|.||....||..||||
BPUM_3485___y 200 AGGCG-AGTGAAATCACACAATCATTTCAAAATTTAACAAGCGAGCTAAA 248
BSNT_05858___ 249 TGATATTATGGAAGTCAAGAAAGGGCACGTACGGATTGGACTGCCGCCGA 298
||||.|.|||.|.|||||.||||||||..|.||.||.||.|||||.||||
BPUM_3485___y 249 TGATTTAATGAATGTCAAAAAAGGGCATATTCGCATCGGGCTGCCACCGA 298
BSNT_05858___ 299 TGATCGGATCGGGGTTTTTCCCGAGAGTGCTCGGCGATTTCCGTGAAAAC 348
||||.||||||.|.||||||||||..||..|.||.||.||.||..|..|.
BPUM_3485___y 299 TGATTGGATCGAGTTTTTTCCCGAATGTCATGGGAGAATTTCGCCAGCAG 348
BSNT_05858___ 349 TATCCGAATGTCACCTTTCAGCTAGTCGAAGACGGTTCTATAAAAGTCCA 398
|||||..|||||||.|||||..|.||.|||.||||.|||||.|||||..|
BPUM_3485___y 349 TATCCAGATGTCACATTTCAATTGGTGGAACACGGCTCTATTAAAGTAGA 398
BSNT_05858___ 399 AGAAGGTGTCGGGGACGGCTCTCTTGATATCGGCGTTGTGGTCCTTCCCG 448
.|||||.||||..||.||.||..|.|||||.||.||..|.||.||.||.|
BPUM_3485___y 399 GGAAGGGGTCGAAGATGGTTCGTTAGATATTGGTGTCATTGTTCTGCCTG 448
BSNT_05858___ 449 CAAACGAAGATATCTTTCATTCGTTTACAATCGTAAAAGA-AACCTTAAT 497
||||.||..|.|||||||||.|||..||.||..|.||||| .||.|.||
BPUM_3485___y 449 CAAATGATAAAATCTTTCATACGTACACCATTATTAAAGAGGACATGAA- 497
BSNT_05858___ 498 GCT--TGTCGTTCACCCTTCCCACCGGCTGGCTGAT---GAGAAAGAATG 542
||| ||.|| ||.||.||.||.|.|.||||.|.| ||.|||| .||
BPUM_3485___y 498 GCTCGTGACG--CATCCATCACATCCGATGGCAGGTCGAGATAAAG-TTG 544
BSNT_05858___ 543 --TCAGCTGAGTGAGTTGAAGGACGAGCCTTTTATTTTCTTCAGAGAGGA 590
|.||| |||.||.|||||.|||.|||||||||||||..||||.||
BPUM_3485___y 545 ATTTAGC----TGATTTAAAGGAAGAGTCTTTTATTTTCTTTCGAGAAGA 590
BSNT_05858___ 591 TTTTGTCCTGCACAACCGAATTATGACGGAATGTATCAAGGCTGGGTTCC 640
.|||||.|||||.|.|||.||..|||..||||||||.||.||.||.||||
BPUM_3485___y 591 CTTTGTTCTGCATAGCCGGATATTGAATGAATGTATGAATGCGGGCTTCC 640
BSNT_05858___ 641 GGCCCCATATCATTTATGAAACATCACAATGGGATTTTATTAGTGAGATG 690
|.|||.||.||||||||||.|||||.|||||||||||.||||||||||||
BPUM_3485___y 641 GACCCAATGTCATTTATGAGACATCTCAATGGGATTTCATTAGTGAGATG 690
BSNT_05858___ 691 GTATCAGCCAACCTTGGG-ATCGGGCTTTTGCCGGAACGGATCTGCCGCG 739
|||.|.|..|| |||||| ||.||.|||.||||.||.|||||||||||.|
BPUM_3485___y 691 GTAGCCGAGAA-CTTGGGAATTGGCCTTCTGCCTGAGCGGATCTGCCGTG 739
BSNT_05858___ 740 GCCTTGACCCGGAAAAAGTGAAAGTCATTCCGCTT------GTCGATCCG 783
..|||||.||.|||||.||||||||||||.| ||| .|||
BPUM_3485___y 740 ATCTTGATCCTGAAAAGGTGAAAGTCATTTC-CTTAAATACATCG----- 783
BSNT_05858___ 784 GTCATCCCTTGGCACCTCGCCATTATTTGGAGAAAGGACCGGTACTTGTC 833
|||||.|||||..|.|...|.||||||.|||||||.||.||.|||||
BPUM_3485___y 784 ---ATCCCGTGGCATTTAGGAGTCATTTGGCGAAAGGATCGCTATTTGTC 830
BSNT_05858___ 834 GTTTGCGGCCAGAGCTTGGCTCGAACATACGAAATCGTATTTATGGGACC 883
|||||||||.||||..|||.|..|||||||||||||.|||.||||||
BPUM_3485___y 831 GTTTGCGGCAAGAGAATGGTTAAAACATACGAAATCCTATGTATGGG--- 877
BSNT_05858___ 884 CGAAAAAAG-AAAGTAAAGGATGA 906
.|| |.|||||
BPUM_3485___y 878 ------GAGCAGAGTAA------- 888
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