Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05858 and BPUM_3485

See Amino acid alignment / Visit BSNT_05858 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:26
# Commandline: needle
#    -asequence dna-align/BSNT_05858___ywbI.1.24716.seq
#    -bsequence dna-align/BPUM_3485___ywbI.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05858___ywbI-BPUM_3485___ywbI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05858___ywbI-BPUM_3485___ywbI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05858___ywbI
# 2: BPUM_3485___ywbI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 924
# Identity:     661/924 (71.5%)
# Similarity:   661/924 (71.5%)
# Gaps:          54/924 ( 5.8%)
# Score: 2265.0
# 
#
#=======================================

BSNT_05858___      1 ATGGATATCCGCCATTTAACATATTTCTTGGAAGTCGCCCGTTTAAAAAG     50
                     .||||.||..|.|||||||||||||||||.|||||.||..|.||||||||
BPUM_3485___y      1 GTGGACATTAGACATTTAACATATTTCTTAGAAGTGGCAAGGTTAAAAAG     50

BSNT_05858___     51 TTTTACGAAGGCTTCCCAATCCCTTTATGTTTCTCAGCCGACGATATCAA    100
                     .||.||.||.||.||.|||||.||||||||.||.|||||.||.|||||.|
BPUM_3485___y     51 CTTCACAAAAGCATCACAATCTCTTTATGTGTCGCAGCCTACCATATCCA    100

BSNT_05858___    101 AAATGATCAAAAATTTAGAAGAAGAGCTCGGAATTG-AACTGTTTTACCG    149
                     |.|||.|||||||..|.|||||.||||| .||..|| |..|.|||||.||
BPUM_3485___y    101 AGATGGTCAAAAACCTTGAAGATGAGCT-AGAGGTGCAGTTATTTTATCG    149

BSNT_05858___    150 AAACGGCAGGCAGGTAGAACTGACTGATGCCGGTCATAGCATGTATGTGC    199
                     .||.|||||.|||||.|||.||||.|||||.||.||.|..||||||...|
BPUM_3485___y    150 GAATGGCAGACAGGTTGAAATGACAGATGCTGGACAAACGATGTATACCC    199

BSNT_05858___    200 AGGCGCAG-GAAATCATTAAATCATTTCAAAACCTGACGTCAGAATTAAA    248
                     ||||| || |||||||...|||||||||||||..|.||....||..||||
BPUM_3485___y    200 AGGCG-AGTGAAATCACACAATCATTTCAAAATTTAACAAGCGAGCTAAA    248

BSNT_05858___    249 TGATATTATGGAAGTCAAGAAAGGGCACGTACGGATTGGACTGCCGCCGA    298
                     ||||.|.|||.|.|||||.||||||||..|.||.||.||.|||||.||||
BPUM_3485___y    249 TGATTTAATGAATGTCAAAAAAGGGCATATTCGCATCGGGCTGCCACCGA    298

BSNT_05858___    299 TGATCGGATCGGGGTTTTTCCCGAGAGTGCTCGGCGATTTCCGTGAAAAC    348
                     ||||.||||||.|.||||||||||..||..|.||.||.||.||..|..|.
BPUM_3485___y    299 TGATTGGATCGAGTTTTTTCCCGAATGTCATGGGAGAATTTCGCCAGCAG    348

BSNT_05858___    349 TATCCGAATGTCACCTTTCAGCTAGTCGAAGACGGTTCTATAAAAGTCCA    398
                     |||||..|||||||.|||||..|.||.|||.||||.|||||.|||||..|
BPUM_3485___y    349 TATCCAGATGTCACATTTCAATTGGTGGAACACGGCTCTATTAAAGTAGA    398

BSNT_05858___    399 AGAAGGTGTCGGGGACGGCTCTCTTGATATCGGCGTTGTGGTCCTTCCCG    448
                     .|||||.||||..||.||.||..|.|||||.||.||..|.||.||.||.|
BPUM_3485___y    399 GGAAGGGGTCGAAGATGGTTCGTTAGATATTGGTGTCATTGTTCTGCCTG    448

BSNT_05858___    449 CAAACGAAGATATCTTTCATTCGTTTACAATCGTAAAAGA-AACCTTAAT    497
                     ||||.||..|.|||||||||.|||..||.||..|.||||| .||.|.|| 
BPUM_3485___y    449 CAAATGATAAAATCTTTCATACGTACACCATTATTAAAGAGGACATGAA-    497

BSNT_05858___    498 GCT--TGTCGTTCACCCTTCCCACCGGCTGGCTGAT---GAGAAAGAATG    542
                     |||  ||.||  ||.||.||.||.|.|.||||.|.|   ||.|||| .||
BPUM_3485___y    498 GCTCGTGACG--CATCCATCACATCCGATGGCAGGTCGAGATAAAG-TTG    544

BSNT_05858___    543 --TCAGCTGAGTGAGTTGAAGGACGAGCCTTTTATTTTCTTCAGAGAGGA    590
                       |.|||    |||.||.|||||.|||.|||||||||||||..||||.||
BPUM_3485___y    545 ATTTAGC----TGATTTAAAGGAAGAGTCTTTTATTTTCTTTCGAGAAGA    590

BSNT_05858___    591 TTTTGTCCTGCACAACCGAATTATGACGGAATGTATCAAGGCTGGGTTCC    640
                     .|||||.|||||.|.|||.||..|||..||||||||.||.||.||.||||
BPUM_3485___y    591 CTTTGTTCTGCATAGCCGGATATTGAATGAATGTATGAATGCGGGCTTCC    640

BSNT_05858___    641 GGCCCCATATCATTTATGAAACATCACAATGGGATTTTATTAGTGAGATG    690
                     |.|||.||.||||||||||.|||||.|||||||||||.||||||||||||
BPUM_3485___y    641 GACCCAATGTCATTTATGAGACATCTCAATGGGATTTCATTAGTGAGATG    690

BSNT_05858___    691 GTATCAGCCAACCTTGGG-ATCGGGCTTTTGCCGGAACGGATCTGCCGCG    739
                     |||.|.|..|| |||||| ||.||.|||.||||.||.|||||||||||.|
BPUM_3485___y    691 GTAGCCGAGAA-CTTGGGAATTGGCCTTCTGCCTGAGCGGATCTGCCGTG    739

BSNT_05858___    740 GCCTTGACCCGGAAAAAGTGAAAGTCATTCCGCTT------GTCGATCCG    783
                     ..|||||.||.|||||.||||||||||||.| |||      .|||     
BPUM_3485___y    740 ATCTTGATCCTGAAAAGGTGAAAGTCATTTC-CTTAAATACATCG-----    783

BSNT_05858___    784 GTCATCCCTTGGCACCTCGCCATTATTTGGAGAAAGGACCGGTACTTGTC    833
                        |||||.|||||..|.|...|.||||||.|||||||.||.||.|||||
BPUM_3485___y    784 ---ATCCCGTGGCATTTAGGAGTCATTTGGCGAAAGGATCGCTATTTGTC    830

BSNT_05858___    834 GTTTGCGGCCAGAGCTTGGCTCGAACATACGAAATCGTATTTATGGGACC    883
                     |||||||||.||||..|||.|..|||||||||||||.|||.||||||   
BPUM_3485___y    831 GTTTGCGGCAAGAGAATGGTTAAAACATACGAAATCCTATGTATGGG---    877

BSNT_05858___    884 CGAAAAAAG-AAAGTAAAGGATGA    906
                           .|| |.|||||       
BPUM_3485___y    878 ------GAGCAGAGTAA-------    888


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