Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00393 and BPUM_3469
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:17
# Commandline: needle
# -asequence dna-align/BSNT_00393___ybfI.1.24716.seq
# -bsequence dna-align/BPUM_3469___yesS.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00393___ybfI-BPUM_3469___yesS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00393___ybfI-BPUM_3469___yesS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00393___ybfI
# 2: BPUM_3469___yesS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1103
# Identity: 457/1103 (41.4%)
# Similarity: 457/1103 (41.4%)
# Gaps: 532/1103 (48.2%)
# Score: 773.0
#
#
#=======================================
BSNT_00393___ 1 ATGCAAAACGAAACCCGCACATTGCAGCTTGACCCACACCTTCATATAGA 50
|||| |.|.|||
BPUM_3469___y 1 ----------------------------TTGA-----------AGAAAGA 11
BSNT_00393___ 51 AGCCTACCGTTTCAAGGGAATTATGCAAAAGTTCCCGAACCACTTTCACG 100
||| ||| |||| || .|..||||||.
BPUM_3469___y 12 AGC----------------ATT-TGCA----TT------TCGTTTTCACC 34
BSNT_00393___ 101 ATTATTATGTGATTGGATTTATTG-----AAAAAGGGCAACGGTATCTGG 145
|||.|.|||||| .|||| |.|| ||||||
BPUM_3469___y 35 ATTCTGATGTGA-------CATTGCCGGCACAA-----------ATCTGG 66
BSNT_00393___ 146 CCTGT---CAGGATCAAGAA-TATATCATCAATCCAGGTGATCTTCTCCT 191
.|||| |.|| ||| | ||| ||||||| |
BPUM_3469___y 67 TCTGTTGGCTGG-----GAAGT------TCA---------ATCTTCT--T 94
BSNT_00393___ 192 CTTTAACCCCCGTGACACGCATAGCTGTGAA------------------- 222
|.||| .||||||| |||
BPUM_3469___y 95 CGTTA--------------TATAGCTG-GAATGGCGTGGAGCGGAAGGAT 129
BSNT_00393___ 223 CAG---------ATT----------GAC-GGCCGGAC---GCTTGATT-- 247
||| ||| .|| |.|.|||| ||.|||||
BPUM_3469___y 130 CAGGGCAAGTGCATTTTTCAGCTCACACTGTCTGGACATGGCATGATTGA 179
BSNT_00393___ 248 -ATCGG-------TGTATCAATGTTATGCCGG------------------ 271
||||| .||.||||.||..||||||
BPUM_3469___y 180 AATCGGAGAAAAACGTTTCAAAGTATTGCCGGGTCAGGCCTTTCTCGTGA 229
BSNT_00393___ 272 -------------------ATATCA---TGGAGAAGGCGGTGAAAGAG-- 297
||||.| |..|||||.|.|| |||
BPUM_3469___y 230 AAAGCCCTAGTGCCTACCAATATTATTTTCCAGAAGACAGT----GAGCA 275
BSNT_00393___ 298 ------ATTACT--------GGCT---CCGGGCATC----------TCCC 320
|||.|| .||| |.|||.||| |.|.
BPUM_3469___y 276 TTGGGAATTTCTCTATTTAACGCTTTACGGGGAATCCTGCGATCTTTGCT 325
BSNT_00393___ 321 TT-----ATTTCT---CCCAG----------CATGTGTTAT--------- 343
|| ||||.| ||.|| ||||.|||.|
BPUM_3469___y 326 TTGACCAATTTATTGACCAAGGAAAGCAGGTCATGCGTTTTCATCCGAAT 375
BSNT_00393___ 344 ----------TCCGCC---------------ATGAGCTGACAGCCAGCCT 368
|||||| |||| ||| |||||| |
BPUM_3469___y 376 TCCAGACCGATCCGCCTGCTCAAGACCATTTATGA--TGA-AGCCAG--T 420
BSNT_00393___ 369 GCAGGA---ATTGCATAT---TTTGATATCCGAGGAAAAACAAGCTTTGC 412
|.|.|| |||.|..|| ||||| |.|| .|.|||.||||
BPUM_3469___y 421 GAAAGACGGATTACCAATCCATTTGA-----GGGG----TCTAGCCTTGC 461
BSNT_00393___ 413 GTAAAGA--------GGAGCTGTTTCTTCATCTAT--------TAGA--- 443
.||...| |||.||| |.|||||.|.| |.||
BPUM_3469___y 462 TTATCAATTTGTCATGGAACTG--TATTCATATTTGCCAAAGCTTGAGGG 509
BSNT_00393___ 444 --------AGAGCTGATCCG---CCATTATTC-AGATGTCACGTTCCTTA 481
|||..||..||| ||||..||| ||.|| ||||
BPUM_3469___y 510 ACAAATGGAGAAATGGCCCGAGCCCATCGTTCAAGCTG-------CCTT- 551
BSNT_00393___ 482 GCAGCGTT--CCAGAACCATCA----GACGAAGTCAAAATGGTTTGTGAA 525
||| |||| |||||| .|||||| |||.|||
BPUM_3469___y 552 -----GTTTGCCAG--CCATCATTTTCACGAAG--AAATTGG-------- 584
BSNT_00393___ 526 TTTTTAGAAGA-------------GCA---TTATGCCGAAA---ATGTTA 556
...|||.|| ||| |||| ||.||| ||.|||
BPUM_3469___y 585 --CCCAGACGATATGGCAGCTGCGGCACGTTTAT-CCAAAAGTCATTTTA 631
BSNT_00393___ 557 CACTCAATGATTTGAGTGAATT--AACAGG---CTGG-AGCAAGTATCAT 600
| |||.||||| ||.||| |||| ..|| ||.
BPUM_3469___y 632 C------------GAGGGAATTCAAAAAGGCCACTGGCTTCA-----CAC 664
BSNT_00393___ 601 TTATTGCGTTCATTTACAAAACA------------AAAAGGCATTACCCC 638
.|| ||||.|..|.||.|| |||||||
BPUM_3469___y 665 CTA-----TTCACTACCTAACCAATATTCGGTTAGAAAAGGC-------- 701
BSNT_00393___ 639 TAATAGCTACATGGAAACAATCCGGATT--AATCAAGCCAAAAAACTC-C 685
||||||..| ||| ||.||| |||||.|.|| .
BPUM_3469___y 702 ------------GGAAACGTT----ATTGAAAACAA--CAAAATATTCGA 733
BSNT_00393___ 686 TTGAACAAGGGGTAAGGCCGATTGA-TGCGGC-ATTTCAGACA---GGAT 730
|||||.|| |..||| ||..| |||||| || |||.| |.||
BPUM_3469___y 734 TTGAAGAA-----ATCGCC-ATACAGTGCGGCTAT---AGAAATGCGAAT 774
BSNT_00393___ 731 TCAGCGATCAGAGTCATATGACGAAGTTTTTTAAA--CGGCAGGTGGGGC 778
|....||..|.||||.|..|| ||| ||| |||||
BPUM_3469___y 775 TACTTGAATAAAGTCTTTCGA--AAG------AAAATCGGCA-------- 808
BSNT_00393___ 779 TGACGCCGAAGCAA-TACATGAAGATTTTTGAAAAG-GA-GCTTCACAGA 825
||.|.||.|||||| |.|..||| |.||| || ||.|.|
BPUM_3469___y 809 TGTCTCCAAAGCAACTGCGGGAA--------ACAAGCGATGCATAA---- 846
BSNT_00393___ 826 TGA 828
BPUM_3469___y 846 --- 846
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