Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05948 and BPUM_3467
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:30
# Commandline: needle
# -asequence dna-align/BSNT_05948___galE.1.24716.seq
# -bsequence dna-align/BPUM_3467___galE1.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05948___galE-BPUM_3467___galE1.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05948___galE-BPUM_3467___galE1.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05948___galE
# 2: BPUM_3467___galE1
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1224
# Identity: 606/1224 (49.5%)
# Similarity: 606/1224 (49.5%)
# Gaps: 435/1224 (35.5%)
# Score: 1263.5
#
#
#=======================================
BSNT_05948___ 1 ATGGCAATACTTGTTACTGGTGGTGCCGGGTACATTGGCAGCCACACATG 50
|||.||||..|.|||..|||.||.||.||||||||.||||| .||||
BPUM_3467___g 1 ATGACAATTTTAGTTTGTGGAGGAGCAGGGTACATCGGCAG----TCATG 46
BSNT_05948___ 51 TGTTGAATTATTGAACAGCGGCT-----------------ACGAGATTGT 83
.|.|| |||||| ||||| |.||
BPUM_3467___g 47 CGGTG------------GCGGCTCTTCTAGCGAAAGGCGAACGAG-TAGT 83
BSNT_05948___ 84 TGTTCTTGATAATCTGTCCA-ACAGTTC-------GGCTG-------AGG 118
.||..|.||||||.|| || ||||..| .|||| |||
BPUM_3467___g 84 GGTAGTGGATAATTTG--CAGACAGGCCACAAAGAAGCTGTTTTGGAAGG 131
BSNT_05948___ 119 CGCTGAACCGTGTCAAGGAGATTACGGGAAAAGATTTAACGTTCTACGAA 168
.|| |||| ||| ||.|||
BPUM_3467___g 132 AGC-------TGTC-------TTA---GAGAAG----------------- 147
BSNT_05948___ 169 GCGGATTTATTGGACCGGGAAGCAGTAGAT---GCGGTTTT--------T 207
|.||||||| || |||| ||..|||| |
BPUM_3467___g 148 GGGGATTTA------CG---------AGATCACGCTTTTTTAAGACAGGT 182
BSNT_05948___ 208 GCTGAAA----ATGAAATCGAAGCTGTGATTCATTTTGCTG--GGTTAAA 251
|.|.||| ||.||||.|||||.||.||.||.|||||.| |.||
BPUM_3467___g 183 GTTCAAAACGCATCAAATAGAAGCGGTCATGCACTTTGCGGCAGATT--- 229
BSNT_05948___ 252 AGCA---GTCGGTGAATCTGTTGC-GATTCCGCTCAAATATTATCATAAC 297
|| ||.||.||...|||..| || .|||||.||.||.|||.|.|||
BPUM_3467___g 230 --CACTTGTTGGGGAGAGTGTGACAGA-CCCGCTTAAGTACTATGACAAC 276
BSNT_05948___ 298 AATCTAAC--------AGGAAC--GTTTATTTTATGTGAGGCCATGGAGA 337
||| ||.||| .||||.|..|.|| ||||.|..
BPUM_3467___g 277 -----AACGTTGGCGGAGCAACTGCTTTACTACAAGT-----CATGAATG 316
BSNT_05948___ 338 AATACGGCGTCAAGAAAATTGTGTTCAGTTCATCCGCGACAGTATACGGC 387
|||..|..||.|||.|.||.||.|||..|||..|.||..|.|.||||||.
BPUM_3467___g 317 AATTTGATGTGAAGCACATCGTCTTCTCTTCCACTGCTGCTGCATACGGT 366
BSNT_05948___ 388 GTTCCGGAAAC--ATCACCGAT------TACGGA------GGACTTTCCA 423
|..|| |||.| .| |||||| .||||| |.|| |||
BPUM_3467___g 367 GAACC-GAAGCGGGT-ACCGATCGTTGAAACGGATGAAACGAAC---CCA 411
BSNT_05948___ 424 TTAGGCGCGACAAATCCTTATGGGCAGACGAAGCTCATGCTTGAACAAAT 473
||||||||||||||..|.|||||.||...|.|||||.||||
BPUM_3467___g 412 ---------ACAAATCCTTATGGAGAAACGAAACTAGCGATTGAAAAAAT 452
BSNT_05948___ 474 ATTGCGTGACTTGCATACAGCCGACAATGAGTGG--------AGCGT--- 512
||.|| ||||| |||||
BPUM_3467___g 453 -------------------GCTGA-----AGTGGTCTGAAGAAGCGTATG 478
BSNT_05948___ 513 --------TGCGT--TGCTTCGTTACTTTAACCCGT---TCGGCGCGCAT 549
|.||| |||||||.|||||||| .|| | ||.||.|||
BPUM_3467___g 479 GAATAGAATACGTAGTGCTTCGCTACTTTAA--TGTAGCT-GGTGCCCAT 525
BSNT_05948___ 550 CCTAGCGGACGGA--------TCGGTGAAGA-------CCCGA-ACGGA- 582
||.|| ||||.||.|| ||.|| |||.|
BPUM_3467___g 526 --------ACAGAAGGGCTTGTCGGAGAGGATCATCAGCCTGAGACGCAT 567
BSNT_05948___ 583 ---ATCCCAAATAACCTTATGCCGTATGTGGCACAGGTAGCTGTCGGGAA 629
||.||||.|| ||.|| ||.||.|||.|.||.||
BPUM_3467___g 568 CTCATTCCAATTA---TTTTG------------CAAGTTGCTTTAGGAAA 602
BSNT_05948___ 630 GCTCGAGCA-------ATTAAGCGTATTCGGAAATGACTATCCGACAAAA 672
.|..||.|| ||| ||| ||..||||.|||..||||.|.
BPUM_3467___g 603 ACGAGATCAAATCATGATT-----TAT--GGTGATGATTATGAGACAGAG 645
BSNT_05948___ 673 GACGGGACAGGCGTA--CGCGATTATATTCACGTCGTTGATCTCGCAGAA 720
||.|| ||.|.||| .|.|||||.|||||.||..|.|||.|.|.|| |
BPUM_3467___g 646 GATGG--CACGTGTATTAGAGATTACATTCATGTGATGGATTTAGTAG-A 692
BSNT_05948___ 721 GGC-CACGTCAAGGC----------------GCTGGAAAAAGTATTGAAC 753
||| |||.||...|| |||||||||.|.|.||
BPUM_3467___g 693 GGCACACATCCTAGCTGTTGACCGCTTGCGTGCTGGAAAAGGCAGTG--- 739
BSNT_05948___ 754 TCTACAGGAGCCGATGCATACAACCTTGGAACAGGAACAGG---CTACAG 800
||| |.||||||.|.||.|..|||||||| || |||
BPUM_3467___g 740 -----------CGA--CCTACAACTTAGGGAATGGAACAGGTTTCT-CAG 775
BSNT_05948___ 801 CGTGCTTGAA--ATGGTC---AAAGCCTTTGAAAAAGTGTCAGGGAAAGA 845
|||| | |||| .|||||.|...||||||..|.|||.|
BPUM_3467___g 776 ------TGAAGCA-GGTCGTAGAAGCCGTCAGAAAAGTCACGGGGCA--- 815
BSNT_05948___ 846 GGTTCCGTACCGTTTTGC------GG---ACCGCCGCCCGGGAGACATCG 886
|.||.|.||| || || |..|.|||.||||||| .
BPUM_3467___g 816 --TGCCATCCCG----GCACAAGTGGCAAAAAGGCGCGCGGGAGA----T 855
BSNT_05948___ 887 CCA--CATGCT--TTGCAGATCCTGC-GAAAGCCAAGCGGGATCTGGGCT 931
||| .|.||| |||| |.||.| |||| |||| |||
BPUM_3467___g 856 CCAGCAAAGCTGATTGC---TTCTTCTGAAA---AAGC---------GCT 890
BSNT_05948___ 932 GGGAAGCGAAACGCGGCCTTGAGGA----------AATGTG--------- 962
|..| ||| |.|||| |||.||
BPUM_3467___g 891 GCAA---GAA---------TTAGGATGGACACCTCAATATGCTGACCTTC 928
BSNT_05948___ 963 ---CGCTGATTCCTGGAGA-----TGGCA---GTCTTCTAATGTGA---- 997
||.|.|||| ||| |||.| || |||.||.| .|
BPUM_3467___g 929 ACACGATCATTC----AGAGTGCGTGGGATTGGT-TTCAAAAG-CATCCA 972
BSNT_05948___ 998 -ATGGGTATAAGAGTGCGGAATAA 1020
||||.|||.|.||| ||||||
BPUM_3467___g 973 GATGGCTATCAAAGT---GAATAA 993
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