Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05842 and BPUM_3466
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:25
# Commandline: needle
# -asequence dna-align/BSNT_05842___galT.1.24716.seq
# -bsequence dna-align/BPUM_3466___galT.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05842___galT-BPUM_3466___galT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05842___galT-BPUM_3466___galT.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05842___galT
# 2: BPUM_3466___galT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1702
# Identity: 1048/1702 (61.6%)
# Similarity: 1048/1702 (61.6%)
# Gaps: 341/1702 (20.0%)
# Score: 2965.0
#
#
#=======================================
BSNT_05842___ 1 -------ATGAGTATTATTGAACATCTGGAACAGCTGCTTGAGTATGGCC 43
.||| ||||.|||||.|.||||||||||||.||.|.|||||..
BPUM_3466___g 1 ATGGCGATTGA-TATTTTTGAAAAGCTGGAACAGCTGATTCAATATGGGA 49
BSNT_05842___ 44 TGGAACGAAAA--------------TTGATTTCGATCTGGGATCGGGAAT 79
| .||..|||| |.|||.|| ||||
BPUM_3466___g 50 T-CAATAAAAAGCTCATAACATCACTAGATATC-------------GAAT 85
BSNT_05842___ 80 ATACGAGAAA------------------CCGTCTTTATGAAGCGCTGGGC 111
|||||||||| |.|.|||.||||||| ||.
BPUM_3466___g 86 ATACGAGAAATCGATTGCTTGAGGTGCTCAGGCTTGATGAAGC----GGA 131
BSNT_05842___ 112 ATCA--CACATCCCGAGCCGGTCTCCAGCACCAG-----CATCAAG-CAG 153
|.|| .||| ||| ||||.|..|| |.|.||| ||
BPUM_3466___g 132 AACAAGAACA----------GTC-CCAGGAGAAGAAGACCTTGAAGACA- 169
BSNT_05842___ 154 TCACAAAGCC--TGCCGGACTTGCTAGCTCCCATCTATAAATGGGCTGCG 201
||..||.||| ||| ||.|| |||||.|..
BPUM_3466___g 170 TCTTAATGCCAATGC------------------TCGAT---TGGGCAGTA 198
BSNT_05842___ 202 GAAACCGGCCGAA----TGGAAGCGGATACAGATACGTACCGTGACCTGC 247
|||||.||.|.|| || ||.|| ||.||||||||.|||||..|.|
BPUM_3466___g 199 GAAACAGGGCTAATTCCTG--AGGGG--ACGGATACGTATCGTGATTTAC 244
BSNT_05842___ 248 TCA---GCGCAAAGCTGATGGGCTGTTTTGTGCCTGCCCCGTCCGAG-GT 293
| | |||.||| |.|||||||||||.|||.|| |.|||.|| ||
BPUM_3466___g 245 T-AGATGCGAAAA--TTATGGGCTGTTTGGTGGCT----CCTCCAAGTGT 287
BSNT_05842___ 294 ----CATTCGCAAATTTGAAGAGACAAAAGCATTATACGGCCCAAAACAG 339
.||.|| ||.||||||| |||||| || ||.|||
BPUM_3466___g 288 TATCTATGCG-AAGTTTGAAG----AAAAGC--------GC---AAGCAG 321
BSNT_05842___ 340 GCG---ACAAAGG------------AATTCTATCAATATTCAG-AGGATG 373
|.| .|.|||| ..|||||| .|.||.||| ||.|||
BPUM_3466___g 322 GAGGGACCGAAGGCTGCTACGAGCTGGTTCTAT-GAGATGCAGAAGCATG 370
BSNT_05842___ 374 TCTATTATATACGGACTGACAGAATTGCCAAAAATGTTCATTGG---ACG 420
.|.||||.||.|..||.|.|||.||.|||||||||||.||.||| ||
BPUM_3466___g 371 CCCATTACATTCATACAGGCAGGATCGCCAAAAATGTACAGTGGTTTAC- 419
BSNT_05842___ 421 GTGCCGACCGAATATGGCGAGCTGGAAATGACCATTAACCTATCAAAGCC 470
.||.||.||..||||||.||||||.||.||||||||.|||||||||||
BPUM_3466___g 420 --ACCAACAGACGATGGCGTGCTGGAGATCACCATTAATCTATCAAAGCC 467
BSNT_05842___ 471 TGAAAAGGACCCGAAAGCGATTGCGGCTGCAA---AAG-AGCAGGAACAG 516
.|||||.||.||.|||||.||.|| .||| ||| ||| .|||
BPUM_3466___g 468 AGAAAAAGATCCTAAAGCCATCGC----TCAAGCGAAGAAGC----TCAG 509
BSNT_05842___ 517 ACAA----ATTATCCGATGTGTTTGCTGTGTAAAGAAAATGTCGGCTTCG 562
.||| |.|||||..|.|||.|.||.|||||||||||.||.||.||||
BPUM_3466___g 510 TCAAAAGCAATATCCCCTTTGTCTCCTTTGTAAAGAAAACGTTGGGTTCG 559
BSNT_05842___ 563 AGGGAAGCGTGAATCATCCAGCCCGGCAAAATCACAGAATCATTCC--GG 610
||||.||.||.|||||||||||..|.||.|||||..|.|||||||| .|
BPUM_3466___g 560 AGGGCAGGGTCAATCATCCAGCGAGACAGAATCATCGGATCATTCCTGTG 609
BSNT_05842___ 611 TCATCCT-TGAGGACGAACAATGGTTCCTGCAATTCTCGCCATATGTCTA 659
||| || |.||| ||||...|||||.||||||||.||.||.|||||.||
BPUM_3466___g 610 TCA--CTCTCAGG-CGAATCGTGGTTTCTGCAATTTTCACCTTATGTGTA 656
BSNT_05842___ 660 TTATCCGGAGCACTGCATTGTCTTAAAAGGTGAACATGAACCGATGGAG- 708
.||....|||||.|||||.||.||.|||||..||||||||||.|| |||
BPUM_3466___g 657 CTACAACGAGCATTGCATAGTGTTCAAAGGCAAACATGAACCAAT-GAGC 705
BSNT_05842___ 709 ATCAGCAAAAAAACATTTGGAAGGCTGCTGGCATTTCTTGGCCA------ 752
||||.||||||.||.||||.|.|.||||| ||.||| ||
BPUM_3466___g 706 ATCACCAAAAAGACCTTTGAACGACTGCT----TTCCTT---CATATCTA 748
BSNT_05842___ 753 -ATATCCGCATTATTTTATCGGTTCAAACGCGGATCTGCCGATTGTCGGC 801
|||.|||||.|||||.|||||.||||||||.||.||.|||||||||||.
BPUM_3466___g 749 TATACCCGCACTATTTCATCGGGTCAAACGCCGACCTTCCGATTGTCGGA 798
BSNT_05842___ 802 GGCAGCATCCTAAGCCATGATCATTTCCAAGGCGGCGCGCATGATTTTCC 851
|||||.||..||||.|||||.|||||.||.|||||.||.|||||.|||||
BPUM_3466___g 799 GGCAGTATATTAAGTCATGACCATTTTCAGGGCGGTGCACATGAATTTCC 848
BSNT_05842___ 852 AATGGCACGTGCAGAAGCGGAAGACGT-TTATGAATTAAATGATTATCCC 900
.||||||...|||||...||||||.|| ||.|...|.|||
BPUM_3466___g 849 GATGGCAAAAGCAGAGATGGAAGAAGTCTTTTCTCTCAAA---------- 888
BSNT_05842___ 901 GGCGTGTC-----------GCTGGGCTTAGTGAAGTGGCCGATGTCTGTG 939
||.|.|| |||||..|| |||||.|||||||||||||||
BPUM_3466___g 889 -GCCTTTCCAAATGTGCGAGCTGGTATT-GTGAAATGGCCGATGTCTGTG 936
BSNT_05842___ 940 CTCAGGC-TCCAAGGAGACGAACCG-GGTCATG-TCGCCGAAGCTGCTGA 986
.||.|.| ||.|||.|| .||.|.| .||| | ||||.||.||.||.||
BPUM_3466___g 937 ATCCGCCTTCGAAGCAG-TGAGCAGCAGTC--GCTCGCAGACGCAGCAGA 983
BSNT_05842___ 987 CCATATCTTCCGCAC----GTGGCAGAC-GTATTCCGATGAAAAAGCCGG 1031
...|||||| || |||| |.|| ||||||.||||||.|.|..||
BPUM_3466___g 984 TTTTATCTT----ACATGAGTGG-AAACTGTATTCAGATGAAGAGGTGGG 1028
BSNT_05842___ 1032 CATTGCCGCCTATACAGGCGATACGCCCCATAATACGGTCACACCGATTG 1081
..|...|||..|||||||.||.||.||.||.|||||..|.||.||.||||
BPUM_3466___g 1029 GGTGATCGCTCATACAGGAGAGACTCCTCACAATACCATTACTCCTATTG 1078
BSNT_05842___ 1082 CGCGGCG-CA-GGGGA-GACTTGTACGAACTCGATATCGTACTGAGGAAC 1128
|.||||| || ||||| ||| ||.|||.|.|||.|.||.|||.|.||.
BPUM_3466___g 1079 CTCGGCGTCACGGGGATGAC---TATGAATTAGATTTAGTGCTGCGTAAT 1125
BSNT_05842___ 1129 AACCGGACGGATGAGGAGCATCCATTAGGA----ATATTTCATCCTCATC 1174
||||||||..|..||.||||.|| ||| ||.||.|||||.||..
BPUM_3466___g 1126 AACCGGACAAACAAGCAGCACCC----GGACGGCATTTTCCATCCGCACG 1171
BSNT_05842___ 1175 AAGAAGTCCACCATATTAAAAAAGAAAATATCGGCCTGATTGAGGTCATG 1224
|||||||.|||||||||||||||||.||||||||..|.|||||.||||||
BPUM_3466___g 1172 AAGAAGTTCACCATATTAAAAAAGAGAATATCGGATTAATTGAAGTCATG 1221
BSNT_05842___ 1225 GGATTGGCGATATTGCCTGGCCGCTTA-CAGGAGGAAATGAAAG------ 1267
||..|.||..|..|.|||||..|.||| || ||||||.| |||
BPUM_3466___g 1222 GGCCTTGCTGTGCTTCCTGGTAGATTAGCA-GAGGAATT--AAGCCAATT 1268
BSNT_05842___ 1268 AAACGGCAGCGGCGCTATGCTCTGCTGATCCAAAA--ACAGCCTT--AGA 1313
|||.| |.|||.|.|| ||||.||| .|| ||| |||
BPUM_3466___g 1269 AAAAG-----------AGGCTTTACT-ATCCGAAAGTCCA--CTTGAAGA 1304
BSNT_05842___ 1314 A--CAAAATCCGCTCACGGCAAAGCATAGTGAA----------TGGGCTC 1351
| ||||..||| ||..| |||.|| |||| |||||..
BPUM_3466___g 1305 AATCAAAGCCCG-TCCTG--AAATCA---TGAAGCACGAGGCTTGGGCAA 1348
BSNT_05842___ 1352 TTCGGATGATGGAAAAAAGAACCATAACAAAAGAGAATGCAGATCTAGTC 1401
..||||||.|.|||.|.|..|||.|.|||.|.||.|||.| ||.|..|
BPUM_3466___g 1349 AGCGGATGCTTGAAGAGAACACCTTTACAGAGGATAATAC---TCAAACC 1395
BSNT_05842___ 1402 A---TAAAAGAAGAGCTGGGACATGTATTCGCTCGCATTCTTGAACACGC 1448
| ||.||.||||.||.||...|.|.||..||||.|||||...|||.||
BPUM_3466___g 1396 ATTTTACAAAAAGAACTTGGTGTTATTTTTTCTCGAATTCTCTCACAGGC 1445
BSNT_05842___ 1449 CGGTGTATTTAAACAGA---CAGCAGTGGGAAAACAGGCCTTCAGAAGGT 1495
.|||||.|||||| ||| .|||| .||||||||| ||.||.|...|.|
BPUM_3466___g 1446 AGGTGTGTTTAAA-AGAACTGAGCA-AGGGAAAACA-GCTTTTAACCGTT 1492
BSNT_05842___ 1496 TCA-TCGATCAGTTGGGCGCCAAAC---CA-GTCAAAAGCCTCAACCGCT 1540
||| ||.|.||.|| ||||| || ||.|
BPUM_3466___g 1493 TCATTCAAACACTT------CAAACAGGCAGGTGA--------------- 1521
BSNT_05842___ 1541 AG 1542
BPUM_3466___g 1521 -- 1521
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