Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05837 and BPUM_3464
See
Amino acid alignment /
Visit
BSNT_05837 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:25
# Commandline: needle
# -asequence dna-align/BSNT_05837___qoxA.1.24716.seq
# -bsequence dna-align/BPUM_3464___qoxA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05837___qoxA-BPUM_3464___qoxA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05837___qoxA-BPUM_3464___qoxA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05837___qoxA
# 2: BPUM_3464___qoxA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1002
# Identity: 705/1002 (70.4%)
# Similarity: 705/1002 (70.4%)
# Gaps: 87/1002 ( 8.7%)
# Score: 2449.5
#
#
#=======================================
BSNT_05837___ 1 ------------TTGTTCAGAG-CATTAAAACCGTTGCTTGTATTAGCGC 37
|||||||||| |||| |||||..|||||.||||||||.
BPUM_3464___q 1 ATGGTGATCTTCTTGTTCAGAGCCATT-AAACCTATGCTTTTATTAGCGA 49
BSNT_05837___ 38 TGTTAACT-----GTGGTTTTCGTCCTTGGGGGATGCAGCAAT---GCTT 79
|| || |||.||||| |..|.||.||.||||||||| |||
BPUM_3464___q 50 TG----CTCGTGAGTGTTTTTC-TATTAGGAGGTTGCAGCAATATCGCT- 93
BSNT_05837___ 80 CAGTACTAGATCCGAAAGGACCTGTAGCTGAACAGCAAAGTGATTTAATC 129
||..|||||||.|||||||||||.||.|.|||.||||..||.||||||
BPUM_3464___q 94 --GTTTTAGATCCTAAAGGACCTGTCGCAGCACAACAAAAAGACTTAATC 141
BSNT_05837___ 130 CTGTTATCTATCGGATTTATGCTGTTTATCGTCGGGGTCGTCTTTGTTCT 179
||.|||||.||||||||.|||||.||||||||.||.|..||.|||||..|
BPUM_3464___q 142 CTTTTATCCATCGGATTCATGCTCTTTATCGTTGGTGCGGTATTTGTATT 191
BSNT_05837___ 180 ATTTACCATTATTTTAGTAAAATACCGCGACCGTAAAGGCAAAGATAATG 229
.||||||||||||||.||.||||||||.||.|||||.|.|...|..||.|
BPUM_3464___q 192 GTTTACCATTATTTTGGTTAAATACCGTGAGCGTAAGGACGTTGGAAACG 241
BSNT_05837___ 230 GATCTTATAACCCAGAAATTCACGGTAACACGTTTTTAGAAGTAGTCTGG 279
..|||||||||||||||.|.|||||.||.|||.||.|||||||.||||||
BPUM_3464___q 242 CCTCTTATAACCCAGAACTACACGGGAATACGCTTCTAGAAGTTGTCTGG 291
BSNT_05837___ 280 ACAGTGATCCCAATTTTAATCGTCATTGCACTTTCTGTGCCAACAGTACA 329
||||||||||||||.||||||||...|||.|||||.||.|||||.|||.|
BPUM_3464___q 292 ACAGTGATCCCAATATTAATCGTTGCTGCCCTTTCAGTTCCAACTGTAAA 341
BSNT_05837___ 330 GACGATATATTCGTTAGAAAAAGCTCCTGAAGCAACAAAAGACAAAGAGC 379
.||.||.||.||.||.|||.|.||.|||.|||||||||...|.|||||.|
BPUM_3464___q 342 AACCATTTACTCTTTGGAAGAGGCACCTCAAGCAACAAGCCATAAAGATC 391
BSNT_05837___ 380 CTCTTGTTGTTTATGCTACTTCGGTAGACTGGAAATGGGTATTCAGCTAC 429
|||||||.|||||||||||..|.||.||.|||||||||.|.||||||||.
BPUM_3464___q 392 CTCTTGTCGTTTATGCTACAGCTGTTGATTGGAAATGGATTTTCAGCTAT 441
BSNT_05837___ 430 CCTGAACAGGATATTGAAACGGTCAACTACTTAAACATTCCTGTCGACCG 479
||.||..|..|||||||.||.||.|||||||||||||||||....||.|.
BPUM_3464___q 442 CCAGAGGAAAATATTGAGACAGTGAACTACTTAAACATTCCAAAAGATCA 491
BSNT_05837___ 480 CCCGATCTTGTTCAAAATCTCATCTGCAGATTCAATGGCTTCGCTATGGA 529
.|||.|.||.|||||||||.|.|||||.|||.|||||||.||.|||||||
BPUM_3464___q 492 GCCGGTTTTATTCAAAATCACTTCTGCTGATACAATGGCATCACTATGGA 541
BSNT_05837___ 530 TTCCTCAGCTTGGAGGACAAAAATATGCGATGGCAGGAATGCTGATGGAT 579
||||||||||.||.||..|.||.|||||||||||.||||||..||||||.
BPUM_3464___q 542 TTCCTCAGCTAGGCGGGGAGAAGTATGCGATGGCTGGAATGGAGATGGAA 591
BSNT_05837___ 580 CAATA-CTTACAGGCTGACAAAGTGGGTACTTACGAAGGCCGCAACGCGA 628
||||| ||| ||.|||||..||||.||.||.||.|||||..|.|||||.|
BPUM_3464___q 592 CAATATCTT-CAAGCTGATCAAGTTGGCACATATGAAGGAAGAAACGCCA 640
BSNT_05837___ 629 ACTTCACAGGTGAACACTTTGCAGACCAAGAGTTTGATGTGAAT------ 672
||||||||||.||...||||||..|.|||.|.||..|.||.|||
BPUM_3464___q 641 ACTTCACAGGCGAGGGCTTTGCTCAACAAAAATTCAAAGTCAATGCGATG 690
BSNT_05837___ 673 --GCAGTCACAGAAAAAGACTTTAACAGCTGGGTGAAAAAGACTCAGAAC 720
|||||| .||||.|.|.|..|||||.|..||.||..|.||.
BPUM_3464___q 691 AAGCAGTC--------TGACTATGATAAATGGGTAAGCAAAACGAAAAAA 732
BSNT_05837___ 721 GAGGCTCCTAAGCTGACAAAAGAGAA-GTATGATGAATTGATGCTTCCTG 769
||.||.||.|||.|.|| .||||.|| ||||||..|.|||||||||||||
BPUM_3464___q 733 GAAGCACCGAAGTTAAC-GAAGAAAACGTATGACTACTTGATGCTTCCTG 781
BSNT_05837___ 770 A------AAATGTGGACGAATTAACGTTCTCTTCTACTCACTTGAAATAC 813
| |.|||||.| .||.|||||.||.||.||.|| ||.|
BPUM_3464___q 782 ATGCTGCAGATGTGCA------GACATTCTCATCAACACATTT---ATCC 822
BSNT_05837___ 814 GTTG---ATCACGGACAAGACGCTGAGTACGCGATGGAGGCGCGCAAACG 860
.||| |.||.|||.|.||..||||.|||||..|..|.||.||||||||
BPUM_3464___q 823 TTTGCGAAGCATGGAGAGGATTCTGAATACGCACTCCAAGCACGCAAACG 872
BSNT_05837___ 861 CCTTGGCTATCAAGCCGTTTCACCGCACTCTAAAACAGATCCGTTTGAAA 910
..|.||.||.|||.|.|||||.|||||.||.|||||||||||.||.||.|
BPUM_3464___q 873 TTTAGGTTACCAATCAGTTTCTCCGCATTCCAAAACAGATCCTTTCGAGA 922
BSNT_05837___ 911 ACGTAAAGAA----AAACGAATTTAAGAAGTCT-GATGATACAGAAGAAT 955
|.||.||||| || |||||..|| |||.|| |||.||
BPUM_3464___q 923 ATGTGAAGAACTATAA--------AAGAAAACTAGATAAT---GAATAA- 960
BSNT_05837___ 956 GA 957
BPUM_3464___q 960 -- 960
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.