Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05833 and BPUM_3461
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:25
# Commandline: needle
# -asequence dna-align/BSNT_05833___qoxD.1.24716.seq
# -bsequence dna-align/BPUM_3461___qoxD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05833___qoxD-BPUM_3461___qoxD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05833___qoxD-BPUM_3461___qoxD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05833___qoxD
# 2: BPUM_3461___qoxD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 410
# Identity: 268/410 (65.4%)
# Similarity: 268/410 (65.4%)
# Gaps: 64/410 (15.6%)
# Score: 853.5
#
#
#=======================================
BSNT_05833___ 1 ATGGC-----AAACAAA----TCTGCTGAACACAGTCACTTTCCATGGAA 41
||||| |||||.| ||.||.||.|||...|||||.||.|||||
BPUM_3461___q 1 ATGGCTGGAAAAACACATTCCTCAGCAGAGCACGAACACTTCCCTTGGAA 50
BSNT_05833___ 42 ACACATTGTAGGTTTTATCCTGTCTATCGTTTTGACCCTGCTGGCTCTAT 91
||||.|.||.||.||.||.||.||.|||||..|.|||.|..|.||..|.|
BPUM_3461___q 51 ACACGTAGTTGGCTTCATTCTATCCATCGTGCTAACCGTTTTAGCATTCT 100
BSNT_05833___ 92 GGGTTGCAGTGTATACTGACCTGAGCTCA----------TCAGCAAAACT 131
||.|||| ||.|| |||||.| ||.||||||||
BPUM_3461___q 101 GGATTGC------TATTG----GAGCTGAAATTGGCAGTTCTGCAAAACT 140
BSNT_05833___ 132 TTGGATTATCTTCGGCTTCGCCTTCATTCAGGCGGCGCTGCAGCTTCTCA 181
.|||||||||||.||.||.||.||||||||.|||....|||||||..|||
BPUM_3461___q 141 ATGGATTATCTTTGGTTTTGCTTTCATTCAAGCGTTCTTGCAGCTATTCA 190
BSNT_05833___ 182 TGTTCATGCATATGACAGAGAGCGAAAACGGCACGATCCAAGTCGGAAAC 231
||||.|||||.||||||||.|||||.|||||.||..|.|||||||||||.
BPUM_3461___q 191 TGTTTATGCACATGACAGAAAGCGAGAACGGAACTGTTCAAGTCGGAAAT 240
BSNT_05833___ 232 ACGCTGTTCGGATTCTTTGGCGCGA------TCGTTATCGTACTTGGATC 275
||..||||.||..|.|||.|.|||| |||||||| |||||
BPUM_3461___q 241 ACATTGTTTGGTCTGTTTTGTGCGATTATCTTCGTTATC------GGATC 284
BSNT_05833___ 276 CATCTGGATTTTCGCGGCTCACTATCA-CCATGGTG-----ACCATATGG 319
..|.|||||.||.||||||||||| || |||.||.| |.||.| |
BPUM_3461___q 285 TGTTTGGATCTTTGCGGCTCACTA-CAGCCACGGAGAGAACAGCAAA--G 331
BSNT_05833___ 320 ACGGAAAT---CCTCCTGGAGGCGCTGAA-CACTCAGAGCATTCAGGCCA 365
||||..|| |||.|| ||||..|| ||.||.||||||||||
BPUM_3461___q 332 ACGGTTATTCACCTTCT----GCGCCAAAGCAATCTGAGCATTCAG---- 373
BSNT_05833___ 366 TAACGAATAA 375
|..|||||
BPUM_3461___q 374 --AGAAATAA 381
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