Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05831 and BPUM_3460

See Amino acid alignment / Visit BSNT_05831 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:25
# Commandline: needle
#    -asequence dna-align/BSNT_05831___ywcE.1.24716.seq
#    -bsequence dna-align/BPUM_3460___ywcE.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05831___ywcE-BPUM_3460___ywcE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05831___ywcE-BPUM_3460___ywcE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05831___ywcE
# 2: BPUM_3460___ywcE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 279
# Identity:     188/279 (67.4%)
# Similarity:   188/279 (67.4%)
# Gaps:          27/279 ( 9.7%)
# Score: 569.0
# 
#
#=======================================

BSNT_05831___      1 ATGATGGACATGTTTTTTGCTTACTTACTG-GTTGCCAGCGCAACGCCTC     49
                        |||||.|||||.|||||.|||.|| || .||||.|..||.||.||.|
BPUM_3460___y      1 ---ATGGATATGTTCTTTGCGTACCTA-TGTATTGCAACGGCTACACCCC     46

BSNT_05831___     50 TCTTTATTTGGCTTGATAACAAAAAAGTCGCACTCTCAGCTATTCCGCCA     99
                     |.|||.|.|||.|.||.||||.||||.|.|||||..|..|||||||.||.
BPUM_3460___y     47 TGTTTTTATGGTTGGAAAACAGAAAAATTGCACTTGCTTCTATTCCACCC     96

BSNT_05831___    100 ATCATTTTAATGTGGGTATTCTTC-TTCTTTTACGCAACA-GA-AAGC--    144
                     ||.||..|.||||||.|.|||||| .|||||      ||| || ||||  
BPUM_3460___y     97 ATTATGATTATGTGGATTTTCTTCGGTCTTT------ACATGACAAGCAG    140

BSNT_05831___    145 -CTTTCTCCACTTGGACACACTCTCATGATTATCTTGTTTGCCGTTAACG    193
                      .|.||||||...|||||.||..|||||||....||.||||||.||||||
BPUM_3460___y    141 TTTATCTCCAGCAGGACATACCTTCATGATCGCATTCTTTGCCATTAACG    190

BSNT_05831___    194 TCATTGTCGCTCATATCGCCGCATTTATCATTTACGGCCTTCCGTATC-T    242
                     |||||.|.||.||.||.||.||.||..|||||||.||.|||||.| || |
BPUM_3460___y    191 TCATTTTGGCACACATTGCAGCGTTCCTCATTTATGGACTTCCAT-TCAT    239

BSNT_05831___    243 TCGCAGAAAG----CGAAGCAGCTGA---    264
                     |||.| ||||    .|.||||.|.||   
BPUM_3460___y    240 TCGTA-AAAGATTCAGTAGCACCAGATAA    267


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