Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05827 and BPUM_3458

See Amino acid alignment / Visit BSNT_05827 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:24
# Commandline: needle
#    -asequence dna-align/BSNT_05827___nfrA.1.24716.seq
#    -bsequence dna-align/BPUM_3458___nfrA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05827___nfrA-BPUM_3458___nfrA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05827___nfrA-BPUM_3458___nfrA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05827___nfrA
# 2: BPUM_3458___nfrA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 806
# Identity:     528/806 (65.5%)
# Similarity:   528/806 (65.5%)
# Gaps:         112/806 (13.9%)
# Score: 1568.5
# 
#
#=======================================

BSNT_05827___      1 ATGAATAACACAATCGAAACCATTTTGAATCATCGGTCAATCCGGTCTTT     50
                     .||||.||.||.||.|||||.||.||.|||||||||||.|||||.||.||
BPUM_3458___n      1 TTGAACAAAACGATAGAAACGATATTAAATCATCGGTCCATCCGTTCGTT     50

BSNT_05827___     51 TACTGATCAGCTTTTGACAGCTGAAGAAAT--TGATA--CATTAGTGAAA     96
                     |||.||..|||.||||.|.|..|||||..|  |||.|  ||||    |||
BPUM_3458___n     51 TACAGACGAGCGTTTGTCCGAAGAAGAGGTGCTGACACTCATT----AAA     96

BSNT_05827___     97 AGTGCGCAGGCTGCGTCTACATCCAGCTATGTGCAGGCATATTCGATTAT    146
                     |||||.||||||||.||.|||||.||||||||.|||||.||....|||||
BPUM_3458___n     97 AGTGCACAGGCTGCTTCGACATCAAGCTATGTACAGGCGTACAGTATTAT    146

BSNT_05827___    147 CGGGGTTTCTGATCCTGAGAAAAAACGTG----AGCTGTCCGTGCTTGCT    192
                     .||.||..|.||||...||||.||    |    ||||..|.|..||.|||
BPUM_3458___n    147 TGGTGTGACAGATCAAAAGAAGAA----GGCCAAGCTTGCTGAACTGGCT    192

BSNT_05827___    193 GGGAATCAGCCTTACGTTGAGAAGAACGGACACTTTTTTGTATTTTGTGC    242
                     |||||||||||.||||||||||||||.||.||.||.|||||.||.|||||
BPUM_3458___n    193 GGGAATCAGCCGTACGTTGAGAAGAATGGGCATTTCTTTGTCTTCTGTGC    242

BSNT_05827___    243 GGATTTGTACCGCCATCA-------ACAACTGGCTGAGGAAAAAG--GTG    283
                     .||.|||.|.||||||.|       .|||          ||||||  |.|
BPUM_3458___n    243 AGACTTGAAACGCCATGATGATATTGCAA----------AAAAAGCAGGG    282

BSNT_05827___    284 AACATAT--TTCTGAGCTGCTCGAGAATACAGAAATGTTTATGGTTAGCT    331
                     ||.| ||  |...|||..|||.||||||||.|||...|||.|..|||||.
BPUM_3458___n    283 AAGA-ATCATCAGGAGGCGCTTGAGAATACGGAAGCCTTTCTCATTAGCG    331

BSNT_05827___    332 TGATTGATGCGGCGCTGGCAGCGCAAAATATGAGCATTGCCGCTGAATCC    381
                     |.||||||.||||.||.||.||.|||||||||||.||.|||||.|||||.
BPUM_3458___n    332 TCATTGATACGGCACTCGCTGCACAAAATATGAGTATAGCCGCAGAATCA    381

BSNT_05827___    382 ATGGGGCTTGGCATTTGCTATATCGGCGGCATTCGGAATGAACTG-GACA    430
                     |||||.|||||.||.||||||||.||.||..|.||.|||.||||| ||.|
BPUM_3458___n    382 ATGGGACTTGGGATCTGCTATATTGGGGGTCTGCGCAATCAACTGAGAGA    431

BSNT_05827___    431 AGGTGACAGAGGTGCTGCAAACGCCTGACC--ATGTGCTCCCGCTTTTCG    478
                     | ||..|.||..||||..||||.||  |.|  |||||.|.|||.|.||.|
BPUM_3458___n    432 A-GTCTCTGATCTGCTTGAAACACC--ATCATATGTGTTGCCGTTATTTG    478

BSNT_05827___    479 GACTGGCAGTAGGCCATCCTGCGAACCTTTCCGGCAAAAAACCGA--GAT    526
                     |.||||..||.||.|||||.||.|..|..| ||.||.|||| .||  |..
BPUM_3458___n    479 GTCTGGTTGTCGGACATCCAGCAAGTCAAT-CGTCACAAAA-GGAACGGC    526

BSNT_05827___    527 TGCC-----AAAGCAGGCCGTTTATCATGAGAATACGTAT----AATGTG    567
                     ||||     ||..||     ||||||||||.|||.|.|||    ||..||
BPUM_3458___n    527 TGCCAGTTGAACTCA-----TTTATCATGAAAATTCATATCAGCAAGATG    571

BSNT_05827___    568 AA-CACA-GACGATTTCCGTCATACT---ATGAATACGTATGACAAAACC    612
                     || |.|| |..|||   |||  ||.|   |.||||||| |||     |.|
BPUM_3458___n    572 AAGCGCATGTGGAT---CGT--TATTTAAAAGAATACG-ATG-----ATC    610

BSNT_05827___    613 --ATTTCTGAT--TACTATAGAGAAAGAACAAACGGGCAGCGGGA--AGA    656
                       |||||  ||  ||.|||..||||.||||||||||  ||.|.||  |||
BPUM_3458___n    611 GTATTTC--ATCCTATTATGAAGAACGAACAAACGG--AGAGAGAACAGA    656

BSNT_05827___    657 AACGTGGTCCGATCAAATACT-----GAACTTTATGAAGCAAAAGC-CGC    700
                     .||.|||||..|.||.||.||     |  |||||...|||.||||| .||
BPUM_3458___n    657 TACTTGGTCTAAGCAGATGCTTCGCGG--CTTTAGTCAGCCAAAGCGTGC    704

BSNT_05827___    701 GTAC------GTATTTAAATGACTACGTGAAAGAAAAGGGCTTTAATAAA    744
                     .|.|      |.||||          ||.|||||.||||||||||||..|
BPUM_3458___n    705 CTTCCTTGGGGAATTT----------GTAAAAGAGAAGGGCTTTAATCGA    744

BSNT_05827___    745 AACTAA    750
                     ||.|||
BPUM_3458___n    745 AAATAA    750


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