Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05827 and BPUM_3458
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:24
# Commandline: needle
# -asequence dna-align/BSNT_05827___nfrA.1.24716.seq
# -bsequence dna-align/BPUM_3458___nfrA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05827___nfrA-BPUM_3458___nfrA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05827___nfrA-BPUM_3458___nfrA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05827___nfrA
# 2: BPUM_3458___nfrA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 806
# Identity: 528/806 (65.5%)
# Similarity: 528/806 (65.5%)
# Gaps: 112/806 (13.9%)
# Score: 1568.5
#
#
#=======================================
BSNT_05827___ 1 ATGAATAACACAATCGAAACCATTTTGAATCATCGGTCAATCCGGTCTTT 50
.||||.||.||.||.|||||.||.||.|||||||||||.|||||.||.||
BPUM_3458___n 1 TTGAACAAAACGATAGAAACGATATTAAATCATCGGTCCATCCGTTCGTT 50
BSNT_05827___ 51 TACTGATCAGCTTTTGACAGCTGAAGAAAT--TGATA--CATTAGTGAAA 96
|||.||..|||.||||.|.|..|||||..| |||.| |||| |||
BPUM_3458___n 51 TACAGACGAGCGTTTGTCCGAAGAAGAGGTGCTGACACTCATT----AAA 96
BSNT_05827___ 97 AGTGCGCAGGCTGCGTCTACATCCAGCTATGTGCAGGCATATTCGATTAT 146
|||||.||||||||.||.|||||.||||||||.|||||.||....|||||
BPUM_3458___n 97 AGTGCACAGGCTGCTTCGACATCAAGCTATGTACAGGCGTACAGTATTAT 146
BSNT_05827___ 147 CGGGGTTTCTGATCCTGAGAAAAAACGTG----AGCTGTCCGTGCTTGCT 192
.||.||..|.||||...||||.|| | ||||..|.|..||.|||
BPUM_3458___n 147 TGGTGTGACAGATCAAAAGAAGAA----GGCCAAGCTTGCTGAACTGGCT 192
BSNT_05827___ 193 GGGAATCAGCCTTACGTTGAGAAGAACGGACACTTTTTTGTATTTTGTGC 242
|||||||||||.||||||||||||||.||.||.||.|||||.||.|||||
BPUM_3458___n 193 GGGAATCAGCCGTACGTTGAGAAGAATGGGCATTTCTTTGTCTTCTGTGC 242
BSNT_05827___ 243 GGATTTGTACCGCCATCA-------ACAACTGGCTGAGGAAAAAG--GTG 283
.||.|||.|.||||||.| .||| |||||| |.|
BPUM_3458___n 243 AGACTTGAAACGCCATGATGATATTGCAA----------AAAAAGCAGGG 282
BSNT_05827___ 284 AACATAT--TTCTGAGCTGCTCGAGAATACAGAAATGTTTATGGTTAGCT 331
||.| || |...|||..|||.||||||||.|||...|||.|..|||||.
BPUM_3458___n 283 AAGA-ATCATCAGGAGGCGCTTGAGAATACGGAAGCCTTTCTCATTAGCG 331
BSNT_05827___ 332 TGATTGATGCGGCGCTGGCAGCGCAAAATATGAGCATTGCCGCTGAATCC 381
|.||||||.||||.||.||.||.|||||||||||.||.|||||.|||||.
BPUM_3458___n 332 TCATTGATACGGCACTCGCTGCACAAAATATGAGTATAGCCGCAGAATCA 381
BSNT_05827___ 382 ATGGGGCTTGGCATTTGCTATATCGGCGGCATTCGGAATGAACTG-GACA 430
|||||.|||||.||.||||||||.||.||..|.||.|||.||||| ||.|
BPUM_3458___n 382 ATGGGACTTGGGATCTGCTATATTGGGGGTCTGCGCAATCAACTGAGAGA 431
BSNT_05827___ 431 AGGTGACAGAGGTGCTGCAAACGCCTGACC--ATGTGCTCCCGCTTTTCG 478
| ||..|.||..||||..||||.|| |.| |||||.|.|||.|.||.|
BPUM_3458___n 432 A-GTCTCTGATCTGCTTGAAACACC--ATCATATGTGTTGCCGTTATTTG 478
BSNT_05827___ 479 GACTGGCAGTAGGCCATCCTGCGAACCTTTCCGGCAAAAAACCGA--GAT 526
|.||||..||.||.|||||.||.|..|..| ||.||.|||| .|| |..
BPUM_3458___n 479 GTCTGGTTGTCGGACATCCAGCAAGTCAAT-CGTCACAAAA-GGAACGGC 526
BSNT_05827___ 527 TGCC-----AAAGCAGGCCGTTTATCATGAGAATACGTAT----AATGTG 567
|||| ||..|| ||||||||||.|||.|.||| ||..||
BPUM_3458___n 527 TGCCAGTTGAACTCA-----TTTATCATGAAAATTCATATCAGCAAGATG 571
BSNT_05827___ 568 AA-CACA-GACGATTTCCGTCATACT---ATGAATACGTATGACAAAACC 612
|| |.|| |..||| ||| ||.| |.||||||| ||| |.|
BPUM_3458___n 572 AAGCGCATGTGGAT---CGT--TATTTAAAAGAATACG-ATG-----ATC 610
BSNT_05827___ 613 --ATTTCTGAT--TACTATAGAGAAAGAACAAACGGGCAGCGGGA--AGA 656
||||| || ||.|||..||||.|||||||||| ||.|.|| |||
BPUM_3458___n 611 GTATTTC--ATCCTATTATGAAGAACGAACAAACGG--AGAGAGAACAGA 656
BSNT_05827___ 657 AACGTGGTCCGATCAAATACT-----GAACTTTATGAAGCAAAAGC-CGC 700
.||.|||||..|.||.||.|| | |||||...|||.||||| .||
BPUM_3458___n 657 TACTTGGTCTAAGCAGATGCTTCGCGG--CTTTAGTCAGCCAAAGCGTGC 704
BSNT_05827___ 701 GTAC------GTATTTAAATGACTACGTGAAAGAAAAGGGCTTTAATAAA 744
.|.| |.|||| ||.|||||.||||||||||||..|
BPUM_3458___n 705 CTTCCTTGGGGAATTT----------GTAAAAGAGAAGGGCTTTAATCGA 744
BSNT_05827___ 745 AACTAA 750
||.|||
BPUM_3458___n 745 AAATAA 750
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