Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05821 and BPUM_3453
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:24
# Commandline: needle
# -asequence dna-align/BSNT_05821.1.24716.seq
# -bsequence dna-align/BPUM_3453___sacT.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05821-BPUM_3453___sacT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05821-BPUM_3453___sacT.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05821
# 2: BPUM_3453___sacT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 847
# Identity: 352/847 (41.6%)
# Similarity: 352/847 (41.6%)
# Gaps: 371/847 (43.8%)
# Score: 1138.5
#
#
#=======================================
BSNT_05821 0 -------------------------------------------------- 0
BPUM_3453___s 1 TTGAAGATATATAAGATATTGAATAACAATGCAGTGGTTGTAAAGGAAGG 50
BSNT_05821 0 -------------------------------------------------- 0
BPUM_3453___s 51 TGATCAGGAGAAAATTGTGATGGGGCCCGGAATTGCTTTTCAGAAGGGGA 100
BSNT_05821 0 -------------------------------------------------- 0
BPUM_3453___s 101 AAAATGACGTCGTTCCCGTTCAAAAAATAGAGAAAATCTTTGTTGTGCGT 150
BSNT_05821 0 -------------------------------------------------- 0
BPUM_3453___s 151 GAAGAAAATGAGAAATTCAAACAAATCCTTGCAACATTGCCCGAAGCGCA 200
BSNT_05821 0 -------------------------------------------------- 0
BPUM_3453___s 201 TATTGAGGTGGCAGAGCATATCATCAGTTATGCAGAGGGTGAACTGATGA 250
BSNT_05821 0 -------------------------------------------------- 0
BPUM_3453___s 251 TGCCGCTTAGTGATCATATCCACATATCACTGACTGACCATTTATCCTTT 300
BSNT_05821 1 ------------------------------------------TTGCTGCA 8
|||||...
BPUM_3453___s 301 GCCATTGAGCGCATTCAAAAGGGCATTGTGCTATATAATAAATTGCTTGG 350
BSNT_05821 9 TGAGAT-AAAGGCGCTCTATAAAAAAGAATATGAGATCGGCCTGTGGGCG 57
|||||| ||||.| .|.|||||..|.||||||||.||.||...||..||.
BPUM_3453___s 351 TGAGATCAAAGTC-TTATATAAGCAGGAATATGATATTGGGAAGTATGCC 399
BSNT_05821 58 ATCGGACATGTAAAAGAGAC--ATTGGGCATGTCTCTGCCTGAAGATGAA 105
||..|..|||||||.||| | .|.|||..|| ..|||||.||.|||||.
BPUM_3453___s 400 ATTCGTTATGTAAAGGAG-CGGCTCGGGGTTG-AACTGCCGGACGATGAG 447
BSNT_05821 106 GCGGGTTATATTGCCCTTCACATCCATACGGCGAAGATGGATGCGGAGAG 155
||.||.|||.|.||.||.||.||.||||||||.||.|||.||.|||||..
BPUM_3453___s 448 GCAGGGTATGTAGCACTCCATATTCATACGGCCAAAATGAATACGGAGTC 497
BSNT_05821 156 CATGTATTCGGCGCTGAAGCATACGACCATGATCAAAGAAATGATAGAGA 205
.|||.|...|.|..||||..||||.||.|||||||||||||||||.|||.
BPUM_3453___s 498 TATGAAAAAGACCGTGAAATATACAACGATGATCAAAGAAATGATCGAGC 547
BSNT_05821 206 AAATAGAACAATACTT----TAATCGAAAGGTGGATGAAAACAGCATTTC 251
|.||||||...||.|| ||.||.| |.|||||..|.||.|||||
BPUM_3453___s 548 ATATAGAAAGCTATTTTCAGTATTCAA----TTGATGAGGATAGTATTTC 593
BSNT_05821 252 CTATCAACGCCTTGTCACGCATTTGCGATACGCGGTCAGCCGGTTGGAAT 301
||||||.||.|||||.||.||||||.|.||.||..|..||.|||||||||
BPUM_3453___s 594 CTATCAGCGGCTTGTGACACATTTGAGGTATGCATTAGGCAGGTTGGAAT 643
BSNT_05821 302 CAAATGAAGCGCTCC--ATCGTATGGACGAGGAGATGCTTTATTTCATCC 349
|||||||.||..|.| ||| ||||||||.||.|||||...|||.||||
BPUM_3453___s 644 CAAATGAGGCATTTCAAATC--ATGGACGATGACATGCTGAGTTTTATCC 691
BSNT_05821 350 AAAAAAAGTATTCATTCGCCTATCAATGTGCGC-TGGAGCTGGCGGAGTT 398
|||.|||||||...||.||.||.||.|||||.| |||| ||.||.||.||
BPUM_3453___s 692 AAACAAAGTATGATTTGGCTTACCAGTGTGCACGTGGA-CTCGCTGATTT 740
BSNT_05821 399 TTTGAAAAATGAATATCAATTACATTTGCCGGAATCCGAGGCCGGCTATA 448
.|||||||||||||||..|.|..||.|.||.|||||.|||..||||||.|
BPUM_3453___s 741 GTTGAAAAATGAATATGGACTTTATCTCCCTGAATCGGAGATCGGCTACA 790
BSNT_05821 449 TCACGCTGCATGTCCAGCGTCTTCAAGATCTCTCGGAATAA------ 489
||||||||||||||||||||||.||.||| .|.||||..
BPUM_3453___s 791 TCACGCTGCATGTCCAGCGTCTGCAGGAT---GCCGAATTGGTTTAG 834
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