Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05819 and BPUM_3452
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:24
# Commandline: needle
# -asequence dna-align/BSNT_05819___sacP.1.24716.seq
# -bsequence dna-align/BPUM_3452___sacP.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05819___sacP-BPUM_3452___sacP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05819___sacP-BPUM_3452___sacP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05819___sacP
# 2: BPUM_3452___sacP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1447
# Identity: 1017/1447 (70.3%)
# Similarity: 1017/1447 (70.3%)
# Gaps: 119/1447 ( 8.2%)
# Score: 3392.0
#
#
#=======================================
BSNT_05819___ 1 ATGGATTA-CAAAGAGACTGCAAAACGCCTCATT----GAGCTTCTCGGA 45
|||||||| |||| |.||.||.||| ..||| ||.||..|.||.
BPUM_3452___s 1 ATGGATTATCAAA-AAACAGCCAAA----GAATTAACAGAACTATTAGGT 45
BSNT_05819___ 46 GGGAAAGAAAATATTATCAGCGCGGCTCATTGTGCAACAAGACTGCGTTT 95
||.|||||||||.|.|||||.||..|.|||||||||||||||||..|.||
BPUM_3452___s 46 GGCAAAGAAAATGTCATCAGTGCCACGCATTGTGCAACAAGACTCAGATT 95
BSNT_05819___ 96 AGTGATGAAAGATGAA----------TCAAAGATAGATCAAGCACAAGTA 135
.||||||||||||||| .||||||| || || |.
BPUM_3452___s 96 GGTGATGAAAGATGAAGAGCTAATTGACAAAGAT-------GC-CA--TT 135
BSNT_05819___ 136 GAAGAGCTTGATGGCGTCAAAGGGGCTTTCAGCAGCTCTGGCCAGTACCA 185
||.||.|||||.||.||.||.|||||||||...|||||.||.||.|.|||
BPUM_3452___s 136 GAGGAACTTGAAGGGGTAAAGGGGGCTTTCTCAAGCTCGGGGCAATTCCA 185
BSNT_05819___ 186 GATCATTTTCGGAACAGGCCTTGTGAATAAAGTATTCGATGCCTTTGCTA 235
.||||||||.|||||.||....||.||.|||||||..||..|.|||||
BPUM_3452___s 186 AATCATTTTTGGAACGGGAGCAGTCAACAAAGTATATGAACCTTTTGC-- 233
BSNT_05819___ 236 A----AGAAGCTGATATCGAG--------CGTGAAGAACACGTAAATCAT 273
| ||| |||...|.||| ||.|| |||| |||.|.|
BPUM_3452___s 234 ACGTGAGA--CTGGCCTTGAGACAGACGACGAGA--AACA---AAAACCT 276
BSNT_05819___ 274 ------CAGGATGCGGCA---AAAGAAAAGCTGAATCCCGCTGCGAGATT 314
||.||||..||| |||.||||..|||||||...|||..|.||
BPUM_3452___s 277 GTGAGCCATGATGAAGCAGTGAAACAAAAAATGAATCCACTTGCACGTTT 326
BSNT_05819___ 315 TGCGAAAACGCTTTCTAATATTTTTGTTCCAATCATCCCGGCTATTGTAG 364
|||.||.||..|.||.|||||.|||||.||.|||||.||.||.|||||.|
BPUM_3452___s 327 TGCAAAGACATTATCAAATATATTTGTGCCGATCATTCCAGCGATTGTTG 376
BSNT_05819___ 365 CCAGCGGCCTATTAATGGGATTGCTGGGTATGATCAATGCGTTTC--ATT 412
|.|||||..||||||||||.||..|.||.|||||.||.|| .||| ||.
BPUM_3452___s 377 CAAGCGGTTTATTAATGGGCTTATTAGGCATGATGAAAGC-CTTCAAATG 425
BSNT_05819___ 413 GGATGA-GCAAGGATTCTGCGCTTTTGCAGCTGCTTGATATGTTTTCAAG 461
||.||| .|||| .||.|||.||||.||..|||||||||||||.|||||
BPUM_3452___s 426 GGCTGACCCAAG--CTCCGCGATTTTTCAAATGCTTGATATGTTCTCAAG 473
BSNT_05819___ 462 TGCAGCATTTATTTTCTTGCCGATTCTAATCGGGGTCAGCGCTTCAAAAG 511
.|||||.|||||..|.|||||||||.||||.||||||||.||..|.||||
BPUM_3452___s 474 CGCAGCCTTTATCATTTTGCCGATTTTAATTGGGGTCAGTGCAGCGAAAG 523
BSNT_05819___ 512 AGTTTGGCAGCAATCCATACTTGGGAGCGGTCATCGGGGGAATCATGATT 561
|||||||..|.|||||.||.||.|||||.||.||.|||||.||.||||||
BPUM_3452___s 524 AGTTTGGTGGAAATCCGTATTTAGGAGCCGTTATTGGGGGGATTATGATT 573
BSNT_05819___ 562 CATCCGACTCTTTTAAATCCATGGGGATTGGCGGAAGCGACACCTGATTA 611
||.||||..||..|.||.||.||||||.||.|.||.||||.|||.||.||
BPUM_3452___s 574 CACCCGAACCTGCTCAACCCGTGGGGACTGACAGATGCGAAACCAGAGTA 623
BSNT_05819___ 612 CATGCATCTTTTCGGATTTGATATCGCGCTTCTCGGCTACCAGGGAACTG 661
.||||||.|.|||...||||||||.||.|||||.||.|||||.|||||.|
BPUM_3452___s 624 TATGCATTTATTCAATTTTGATATTGCTCTTCTTGGTTACCAAGGAACAG 673
BSNT_05819___ 662 TTATCCCTGTCCTGCTTG-CGGTGTATGTGATGAGCAAGGTAGAGA--AA 708
|.||.||.|| .|..||| |.|||||..|.|||.||...||.||.| ||
BPUM_3452___s 674 TCATTCCAGT-GTTATTGACTGTGTACATCATGTGCCTTGTTGAAAAGAA 722
BSNT_05819___ 709 TGGACGAGAAAAGTGGTTCC--ACATGCGGTA--GATTTGCTTGTTACAC 754
|..| |||||||||||||| ||| ||| |||||.|||||.||.|
BPUM_3452___s 723 TTTA--AGAAAAGTGGTTCCGAACA----GTATTGATTTACTTGTGACCC 766
BSNT_05819___ 755 CATTTGTTACTGTAATTGTCACCGGGTTTGTTGCTGTTATCGCGATTGGC 804
|||||||.||.||.|||||.||.||.|||||..|..||||.||..||||.
BPUM_3452___s 767 CATTTGTGACGGTGATTGTGACTGGATTTGTGACGTTTATTGCTGTTGGG 816
BSNT_05819___ 805 CCTCTAGGCAGAGCGCTTGGCTCCGGCATTACGGTTGCTTTAACTTATGT 854
||.||.||.|||..|||.||..|.||.|||.||..|||..|.||.|.|.|
BPUM_3452___s 817 CCGCTTGGAAGAATGCTCGGTACAGGAATTTCGAATGCACTGACATTTAT 866
BSNT_05819___ 855 GTATGACCATGCCGGTTTTGTTGCGGGCCTGATTTTCGGGGGCACGTATT 904
.|||||.|||||.||.||..|.||.||.||.||||||||.||..|.||.|
BPUM_3452___s 867 TTATGATCATGCAGGGTTCTTAGCAGGACTCATTTTCGGAGGAGCCTACT 916
BSNT_05819___ 905 CACTCATCGTGCTGACAGGCGTTCATCATAGCTTCCATGCGATTGAGGCT 954
|||||||.|||||.|||||.||||||||||||||||||||||||||.|||
BPUM_3452___s 917 CACTCATTGTGCTCACAGGGGTTCATCATAGCTTCCATGCGATTGAAGCT 966
BSNT_05819___ 955 GGGCTTATTGCA-GATATAGGAAAAAACTACTTGCTGCCGATCTGGTCAA 1003
||.| |.|||.| |||||.|||...|||||.||||||||.||.|||.|.|
BPUM_3452___s 967 GGAC-TGTTGAATGATATTGGACGTAACTATTTGCTGCCAATTTGGGCGA 1015
BSNT_05819___ 1004 TGGCGAATGTCGCACAGGGCGGGGCAGGTCTTGCCGTCTTCTTTATGGCG 1053
||.|.||.||.||||||||||||||||||.|.||.|||||.||..|.|||
BPUM_3452___s 1016 TGTCTAACGTAGCACAGGGCGGGGCAGGTTTGGCGGTCTTTTTCTTAGCG 1065
BSNT_05819___ 1054 AAAAAGGCAAAGACAAAAGAAATCGCGCTTCCGGCAGCATTTTCCGCTTT 1103
|||...||.||.|||||.||||||||.||.||.|||||.||.||.|||||
BPUM_3452___s 1066 AAACGAGCGAAAACAAAGGAAATCGCACTACCTGCAGCTTTCTCTGCTTT 1115
BSNT_05819___ 1104 TCTCGGCATTACTGAGCCCGTCATATTCGGAGTCAATCTTCGCTACCGAA 1153
.||.||.|||||.|||||.||.||||||||.||||||||.|||||.||.|
BPUM_3452___s 1116 CCTAGGGATTACCGAGCCTGTGATATTCGGTGTCAATCTCCGCTATCGTA 1165
BSNT_05819___ 1154 AACCGTTTATCGCCGCGATGATCGGAGGCGCATTGGGTGGGGCATATGTC 1203
|.||||||||||||||||||||.|||||||||||.||.|||||||.|||.
BPUM_3452___s 1166 AGCCGTTTATCGCCGCGATGATTGGAGGCGCATTAGGCGGGGCATTTGTT 1215
BSNT_05819___ 1204 GTCTTTACACATGTAGCTGCAAACGCTTACGGGTTAACGGGTATTCCGAT 1253
||.||.|||.|.|||||.||.|||||.||.||.|||||.|||||||||||
BPUM_3452___s 1216 GTTTTCACAAAGGTAGCCGCCAACGCCTATGGTTTAACTGGTATTCCGAT 1265
BSNT_05819___ 1254 GATCGCCATTGCGGCTCCGTTTGGCTTCAGCAACTTG------ATTCACT 1297
|||.||.|||||.||.||.||.|| |..||||..|| || |
BPUM_3452___s 1266 GATTGCGATTGCAGCGCCATTCGG--TGTGCAAAATGTGGTGAAT----T 1309
BSNT_05819___ 1298 ATCTGATTGGCATG------GCGATTGCGGCAGTGTCAGCGTTCA-TCGC 1340
||.|||||||.||| ||..||||| ||.||| ||.| ||.|
BPUM_3452___s 1310 ATGTGATTGGTATGTTAATCGCTGTTGCG---GTCTCA---TTTACTCTC 1353
BSNT_05819___ 1341 AGCATTTGTCATGAAGATTAATGAGGATGAGGAG-AGGAAAAAATGA 1386
| .|.|||| |.|||| ||.|..||.|| || ||||||.|
BPUM_3452___s 1354 A----CTATCAT---GTTTAA--AGTAAAAGAAGTAG--AAAAATAA 1389
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