Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05817 and BPUM_3451
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:23
# Commandline: needle
# -asequence dna-align/BSNT_05817___sacA.1.24716.seq
# -bsequence dna-align/BPUM_3451___sacA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05817___sacA-BPUM_3451___sacA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05817___sacA-BPUM_3451___sacA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05817___sacA
# 2: BPUM_3451___sacA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1593
# Identity: 994/1593 (62.4%)
# Similarity: 994/1593 (62.4%)
# Gaps: 276/1593 (17.3%)
# Score: 2780.5
#
#
#=======================================
BSNT_05817___ 1 ------------ATGACAGCACATGA-TCAGGAGCTTCGTC--------G 29
||||||.||..||| .|||.| ||||||| |
BPUM_3451___s 1 GTGGTCACAGTCATGACAACAACTGACGCAGCA-CTTCGTCAAAAGGTAG 49
BSNT_05817___ 30 CCGGGCTTAT--GAAGA-----AG----TGGAGAAAAAAGAGCCCATCGC 68
|.|..|.||| ||| | || |||.|||||||
BPUM_3451___s 50 CAGAACGTATTCGAA-ACTATGAGCATTTGGTGAAAAAA----------- 87
BSNT_05817___ 69 TGACAGCGATCCGCACCGCCAGCATTTTCATATCATGCCGCCGGTTGGGC 118
|||..|.|.|||||||||||||||.|.||||||||||||||.|
BPUM_3451___s 88 -------GATGTGTATCGCCAGCATTTTCATTTAATGCCGCCGGTTGGTC 130
BSNT_05817___ 119 TGCTGAATGACCCGAATGGCCTGATTTATTGGAAGGGCAGCTATCATGTA 168
|..|.||||||||||||||..|||||.|.|||||.||....||.||..|.
BPUM_3451___s 131 TTTTAAATGACCCGAATGGGTTGATTCAGTGGAAAGGGGTTTACCACATT 180
BSNT_05817___ 169 TTCTTTCAGTGGCAGCCGTTTCAGACGGGGCACGGCGCAAAATTTTGGGG 218
||.|.||||||||||||.||..|.|||||.||||||||||||||||||||
BPUM_3451___s 181 TTTTATCAGTGGCAGCCATTCAAAACGGGTCACGGCGCAAAATTTTGGGG 230
BSNT_05817___ 219 GCATTATA---CGACACAGGATGTTGTGAATTGGAAGCGGGAAGAGATTG 265
.|||||.| ||||| |||.|.|||||||||.|||..||.||....|
BPUM_3451___s 231 CCATTACACATCGACA---GATTTAGTGAATTGGCAGCACGAGGAAGCCG 277
BSNT_05817___ 266 CGCTGGCTCCGAGTGATTGGTTTGATAAAAACGGCTGCTACTCGGGCAGC 315
|.||.||.||.|||||||||||||||.||||||||||.||.||.|||||.
BPUM_3451___s 278 CCCTTGCGCCAAGTGATTGGTTTGATCAAAACGGCTGTTATTCTGGCAGT 327
BSNT_05817___ 316 GCTGTCACGAAAGACGATCGGC---TCTATCTGTTTTACACAGGAAATGT 362
||.||| |..||||||.|.| |.|||.||.|.|||||.||.||.||
BPUM_3451___s 328 GCAGTC---ATTGACGATGGACATATGTATGTGATGTACACTGGCAACGT 374
BSNT_05817___ 363 CAGGGATCAGGATGGAAACCGGGAAACGTATCAATGCCTTGCTGTTTCTG 412
..|.|||.|..|.||.|||||.||.|||||||||||..|.||.|||||.|
BPUM_3451___s 375 TCGCGATGAACAAGGGAACCGCGAGACGTATCAATGTTTAGCAGTTTCAG 424
BSNT_05817___ 413 ACGACGGGCTGTC-CTTTGAGAAAAAGGGTGTTGTCGC-CCGCCTTCCGG 460
|.|| .|||..|| .|||.|||||||.|||||.||.|| .|| |||||.|
BPUM_3451___s 425 AGGA-TGGCATTCATTTTCAGAAAAAAGGTGTCGTGGCGACG-CTTCCAG 472
BSNT_05817___ 461 AAGGATATACGGCGCATTTTCGCGATCCGAAGGTATGGGAGC---ATGA- 506
|.||||..||.||.||||||||.||||||||.||||||.||| ||||
BPUM_3451___s 473 ATGGATTCACTGCCCATTTTCGTGATCCGAAAGTATGGAAGCGAAATGAC 522
BSNT_05817___ 507 -AGGCACATGGTATATGGTGATTGGTGCGCAAACAGAGAATT----TGAA 551
|| |||||.|||||..|.||||| |||.||..|| ||||
BPUM_3451___s 523 CAG-----TGGTACATGGTTCTAGGTGC----ACAAAGCCTTGACCTGAA 563
BSNT_05817___ 552 AGGGCAGGCT-GTATTGTTTGCTTCTGATAACCTGAGTGAG-----TGGA 595
|||| |..|| ||.||||||.|.|||.||| || |.|| ||||
BPUM_3451___s 564 AGGG-AATCTCGTCTTGTTTACCTCTAATA--CT---TTAGACAATTGGA 607
BSNT_05817___ 596 GATTTCTTGGCCCGATAACCGGC-GCGGGCTTCAACGGGCTGGACGATTT 644
..||||..|||...||..|.||| |.||| ...||.||..|.||.|||||
BPUM_3451___s 608 CGTTTCAAGGCATCATTGCAGGCAGTGGG-AAAAATGGATTAGAGGATTT 656
BSNT_05817___ 645 TGGATACATGTGGGAATGTCCGGATTTGTTTTCCCTTCAAGGATCGGACG 694
.||.||.||||||||||||||.|||.|.|||....|..|.||...|||.|
BPUM_3451___s 657 CGGCTATATGTGGGAATGTCCAGATCTATTTGAATTAGATGGCCGGGATG 706
BSNT_05817___ 695 TGCTGATTGTTTCGCCTCAAGGGCTTGAGGCTGACGGTTTCCGTTATCAG 744
|..|||||||.|||||.||.|||||.|||.|..|.||.||....|||||.
BPUM_3451___s 707 TATTGATTGTGTCGCCGCAGGGGCTCGAGCCGAATGGCTTAAAATATCAT 756
BSNT_05817___ 745 AACGTATATCAATCAGGTTATTTTGTCGGG----TGTCTCGATTA----- 785
||...|.|||||||||||||||||||.||| || |||.|
BPUM_3451___s 757 AATACACATCAATCAGGTTATTTTGTTGGGAAATTG----GATGACCATA 802
BSNT_05817___ 786 --TAACAAGCCTGAACTGAAGCATGGTGAATTTACGGAGCTTGATCAAGG 833
||.||| |..|| |||.||.|..|||..||||||.||||.|||
BPUM_3451___s 803 CCTATCAA---TATAC----GCACGGAGCGTTTGAGGAGCTGGATCGAGG 845
BSNT_05817___ 834 TTTTGATTTTTACGCGCCGCAAACACTTGAAGA-TAATCAGGGCAGACGA 882
.|||||.||.||.||||.||||||..||..||| .||||| ||||||||.
BPUM_3451___s 846 CTTTGACTTCTATGCGCAGCAAACCTTTCTAGACGAATCA-GGCAGACGC 894
BSNT_05817___ 883 ATTTTGTTTGCATGGATGGCTGTGCCTGA-CCAGGATGAAGGATC-TCAT 930
.||||..|||.||||||||..|||||||| |.|||| ||| ||.| |||.
BPUM_3451___s 895 CTTTTAATTGGATGGATGGGAGTGCCTGATCAAGGA-GAA-GAGCATCAC 942
BSNT_05817___ 931 CCGACGATTGACTATCACTGGATTCACTGCATGACGCTGCCGAGACAGCT 980
||.||||||...|||||.|||||.||||||.|.||..|.||.|||.||||
BPUM_3451___s 943 CCAACGATTTCTTATCAATGGATACACTGCCTCACCATTCCAAGAGAGCT 992
BSNT_05817___ 981 GAC---AATATCAGGCGAGA-----AGCTGATTCAGCAGCCGCTGCCTGA 1022
|| .|.||.| ||| |.||||||||..||||..|..||||
BPUM_3451___s 993 -ACGTTTAGATGA----AGATGGACATCTGATTCAAAAGCCCGTCACTGA 1037
BSNT_05817___ 1023 GCTGAAAGCCATGCGCAGAAATGAGAAAAAAATACACATCAATATG---- 1068
||| .||.||| |||||||..||..| |||..|..|||
BPUM_3451___s 1038 GCT-----TCAGGCG-----ATGAGAACCAACGA-ACAAGAGCATGTTTT 1076
BSNT_05817___ 1069 -CATGGATCA-----TCTGGT---ACGCTTCCAGTGGAAAAGCCTGA--- 1106
||| |||| ||||.| .||.||||.||.|| |||
BPUM_3451___s 1077 CCAT--ATCAAACGCTCTGTTCAATCGATTCCTGTAGA------TGATAT 1118
BSNT_05817___ 1107 ---AAGAGCTGAG--ATTCTGCTGGAAGACATTCATAC--------GGAG 1143
.||.||.||| |||| .|.||..|.|||.|||| ||
BPUM_3451___s 1119 TACGAGTGCAGAGTTATTC--ATTGATCAAATTGATACACAAAAAGGG-- 1164
BSNT_05817___ 1144 TCTGGCTTTTCAAT-CAGTATCCGCGGAACGGC------TACGTTTTCCT 1186
|||.||| |.||||.||.| |||| || ||.|
BPUM_3451___s 1165 -------TTTGAATGCTGTATTCGTG---CGGCAGCCCGTA-----TCAT 1199
BSNT_05817___ 1187 T--CCAAAAAGACGAGGGGATTGTTACGCTGGAACGAAAGAGC--TTTGA 1232
| ..|.|||||.|||||.|...|.||..|.|| ||.||||| |||||
BPUM_3451___s 1200 TTATGATAAAGATGAGGGCAAACTGACATTAGA--GAGAGAGCGATTTGA 1247
BSNT_05817___ 1233 CG---GAAAAAGAAAAGAGTCGAGACATTGCCGC-ATCAAGGATTTGCA- 1277
.| |||.||.|.||| .|||||| |.|| || ||..||||.||.||
BPUM_3451___s 1248 AGATCGAACAAAAGAAG-TTCGAGA-AGTG--GCAATAGAGGAATTACAC 1293
BSNT_05817___ 1278 TACCGTACACATGTTTCTCGACGCGTCATCTGTGGAAATCTTTATCAATA 1327
.||| |.|||||.||..||||.||.||.||..|.||.||.|||.| .|
BPUM_3451___s 1294 GACC-TTCACATCTTGATCGATGCATCTTCAATTGAGATTTTTGT---AA 1339
BSNT_05817___ 1328 ACGGAG---AAGAGGTCTTTAGTGCGAGATATTTTCCTTTCCCGGGAAAT 1374
|||||| .|||.||.||.|.|||..|.||.|||||||.||||||||||
BPUM_3451___s 1340 ACGGAGGCAGAGAAGTATTGACTGCTCGTTACTTTCCTTCCCCGGGAAAT 1389
BSNT_05817___ 1375 -CATGAAGTAACAGCCAGTTCGACCGG--GAAATCTGAAATGAATGTCTT 1421
.||.|| |..||..|||| || |||| |||||..|| .|||
BPUM_3451___s 1390 AAATCAA-TCTCAATCAGT------GGCAGAAA--TGAAACAAA--ACTT 1428
BSNT_05817___ 1422 --------AATTTGGACACTT--------ATGTAG-------- 1440
||..||| ||.|| |.||||
BPUM_3451___s 1429 AAACTAAAAACATGG-CATTTACAAAGAAAAGTAGATCAATGA 1470
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