Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_05816 and BPUM_3450

See Amino acid alignment / Visit BSNT_05816 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:23
# Commandline: needle
#    -asequence dna-align/BSNT_05816___ywdA.1.24716.seq
#    -bsequence dna-align/BPUM_3450___ywdA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05816___ywdA-BPUM_3450___ywdA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05816___ywdA-BPUM_3450___ywdA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05816___ywdA
# 2: BPUM_3450___ywdA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 365
# Identity:     165/365 (45.2%)
# Similarity:   165/365 (45.2%)
# Gaps:         142/365 (38.9%)
# Score: 414.0
# 
#
#=======================================

BSNT_05816___      0 --------------------------------------------------      0
                                                                       
BPUM_3450___y      1 GTGGAATTATGGTATCATTTTAAAATATATACAGCTGAGGCTGACGTTTA     50

BSNT_05816___      1 ----------------------------------TTGAAT---ATACATG     13
                                                       ||||||   |.|||..
BPUM_3450___y     51 TCCAAATGCGATAGGACAAAAAGGGGTTGTTTACTTGAATTCAAAACAGC    100

BSNT_05816___     14 AACAGA-----AGATAACACCGGAATGTTTGGA---AAAGGCTGCTAACC     55
                     |.|.||     |||.|||        |.|||||   ||.|||.|   |.|
BPUM_3450___y    101 AGCCGACGACTAGAAAAC--------GCTTGGAGACAATGGCAG---ATC    139

BSNT_05816___     56 AAGTTGAAGATAAGCGGGAAGAATATAAGGATGTGCTGCTTCAGCTGAAA    105
                     |.|||||||||||.||.|||||||||||.||..||||..||||..|..||
BPUM_3450___y    140 ATGTTGAAGATAAACGTGAAGAATATAAAGAATTGCTCATTCAAGTCCAA    189

BSNT_05816___    106 AAAATGCTTGGCGGAAC-------AACGCCGCACAG--TGAAACGGCGGA    146
                     ...||.||.|| .||||       |..||.|.| ||  |.|||.|  .||
BPUM_3450___y    190 TCTATTCTCGG-TGAACCTTCTCTAGAGCAGGA-AGAATTAAAAG--AGA    235

BSNT_05816___    147 AATTCTC----ACGCGGGCATATGAACAAATGAAGGAATATGCACTT-TT    191
                     |..|.||    |||      |||.||||||||||.|||||||| ||| ||
BPUM_3450___y    236 AGCTGTCAGATACG------TATAAACAAATGAAAGAATATGC-CTTATT    278

BSNT_05816___    192 TGTTCAGTCGATAGAAACATTTTTGAGGAAATCTGC-AAACAATTT----    236
                     ||||.|.||.||.|||.|.|||.|..|.|||...|| |||.|||.|    
BPUM_3450___y    279 TGTTGAATCTATTGAAGCCTTTATTCGAAAAATGGCGAAAGAATCTGATC    328

BSNT_05816___    237 --AAAAATTAAATAA    249
                       .||||.||.    
BPUM_3450___y    329 AGCAAAAGTAG----    339


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.