Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05815 and BPUM_3448

See Amino acid alignment / Visit BSNT_05815 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:23
# Commandline: needle
#    -asequence dna-align/BSNT_05815___thiD.1.24716.seq
#    -bsequence dna-align/BPUM_3448___thiD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05815___thiD-BPUM_3448___thiD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05815___thiD-BPUM_3448___thiD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05815___thiD
# 2: BPUM_3448___thiD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 827
# Identity:     607/827 (73.4%)
# Similarity:   607/827 (73.4%)
# Gaps:          28/827 ( 3.4%)
# Score: 2169.5
# 
#
#=======================================

BSNT_05815___      1 ATGTCTATGAATAAAGCACTCACCATTGCCGGCTCAGATTCCAGCGGCGG     50
                     ||||||||||||||||||||||||||.||.|||||.|||||.||||||||
BPUM_3448___t      1 ATGTCTATGAATAAAGCACTCACCATCGCAGGCTCGGATTCAAGCGGCGG     50

BSNT_05815___     51 TGCTGGGATTCAAGCTGATTTAAAAACATTTCAAGAAAAAAACGTATACG    100
                     |||.||.||.|||||.|||||||||||.||||||||.||||||||.||.|
BPUM_3448___t     51 TGCAGGTATCCAAGCAGATTTAAAAACGTTTCAAGAGAAAAACGTCTATG    100

BSNT_05815___    101 GGATGACCGCCTTAACGGTGATCGTTGCGATGGACCCAAACAACAGCTGG    150
                     |||||||.||.|||||.||..|||||||.||||||||..|.|||...|||
BPUM_3448___t    101 GGATGACAGCTTTAACCGTTGTCGTTGCAATGGACCCTCATAACCATTGG    150

BSNT_05815___    151 GACCATCAGGTATTCCCGATCGATACTGATACAATCCGCGCCCAGCTTGC    200
                     ||.||||||||.||.||.||.|||||.|..||.|||||.||.|||||..|
BPUM_3448___t    151 GATCATCAGGTGTTTCCAATTGATACGGCGACGATCCGTGCGCAGCTCTC    200

BSNT_05815___    201 AACAATTACGGACGGCATCGGCGTGGACGCCATGAAAACAGGAATGCTGC    250
                     .||.|||...||.|||||.||.||.||.||..||||||||||.|||||.|
BPUM_3448___t    201 TACCATTGTAGAAGGCATTGGGGTAGATGCGCTGAAAACAGGTATGCTCC    250

BSNT_05815___    251 CAACCGTTGACATTATCGAGCTTGCGGCAAAAACGATCAAAGAAAAAC-A    299
                     ||||.||.|||.|.|||||.|||||.||..|.||.|||||| |.|.|| |
BPUM_3448___t    251 CAACAGTCGACGTGATCGAACTTGCAGCGGACACCATCAAA-ACATACGA    299

BSNT_05815___    300 ATTAAAAAATGTGGTAATTGACCCTGTTATGGTTTGCAAAGGTGCTAATG    349
                     ..||||||||||.||.|||||.||||||||||||||.||.|||||.||.|
BPUM_3448___t    300 CCTAAAAAATGTCGTCATTGATCCTGTTATGGTTTGTAAGGGTGCGAACG    349

BSNT_05815___    350 AAGTCCTTTATCCGGAGCACGCCCAAGCCCTGCGTGAGCAATTGGCT---    396
                     ||||.||.|||||.||||||||..||||.|||||.||..|    |||   
BPUM_3448___t    350 AAGTGCTATATCCAGAGCACGCTGAAGCACTGCGCGAAAA----GCTTAC    395

BSNT_05815___    397 -CCGCTAGCCACTGTCATTACGCC-AAACTTGTTTGAAGCCAGCCAGCTC    444
                      ||.||.||.||.||||||||||| ||.||| ||.|||||..|.||..|.
BPUM_3448___t    396 GCCACTGGCAACCGTCATTACGCCTAATCTT-TTCGAAGCAGGTCAATTA    444

BSNT_05815___    445 AGCGGCATGGATGAACTAAAAACAGTTGACGATATGATCGAAGCCGCGAA    494
                     |||||.||.|.|||..|.|||||..||||..|.|||...|||||.||.||
BPUM_3448___t    445 AGCGGAATCGGTGAGATCAAAACGATTGAACAAATGGAAGAAGCAGCAAA    494

BSNT_05815___    495 AAAAATTCACGCACTCGGCGCTCAA-TATGTCGTCATTACAGGCGGAGGC    543
                     |...|||||||.|||.||.|| ||| |||||.|||||.||.||.||.||.
BPUM_3448___t    495 ACGCATTCACGAACTTGGTGC-CAAGTATGTGGTCATCACTGGAGGCGGT    543

BSNT_05815___    544 AAACTCAAACATGAGAAAGCCGTTGATGTTCTCTATGACGGAGAAACAGC    593
                     ||.||.|..|..||.|||||..|.|||.|.||.|||||.|||.||||...
BPUM_3448___t    544 AAGCTAAGCCCAGATAAAGCGATCGATTTGCTTTATGATGGACAAACCTT    593

BSNT_05815___    594 GGAAGTCCTTGAAAGCGAAATGATCGATACGCCTTATACACATGGCGCAG    643
                     .|||...|||||||..||.|.||||||.||....||.|||||.|||||.|
BPUM_3448___t    594 CGAACGACTTGAAACAGATAAGATCGACACAGAATACACACACGGCGCGG    643

BSNT_05815___    644 GCTGTACGTTCTCAGCAGCCGTGACAGCGGAGCTTGCCAAAGGTGCGGAA    693
                     ||||.||.|||||||||||.||.|||||.||.||.||.||.||..|.||.
BPUM_3448___t    644 GCTGCACATTCTCAGCAGCAGTCACAGCTGAACTGGCAAACGGCTCAGAC    693

BSNT_05815___    694 GTCAAAGAAGCCATTTACGCAGCGAAAGAATTCATCACAGCGGCCATTAA    743
                     ||.||||||||||||||.|||||.|||||||||||||||||.|||||.||
BPUM_3448___t    694 GTGAAAGAAGCCATTTATGCAGCAAAAGAATTCATCACAGCTGCCATCAA    743

BSNT_05815___    744 AGAATCCTTCCCGCTAAACCAGTATGTTGGTCCTACGAAGCATTCTGCAC    793
                     ||..||.||||.||||||..|.||..|.||.||.||.|||||||||||.|
BPUM_3448___t    744 AGGCTCTTTCCAGCTAAATGAATACATCGGACCAACAAAGCATTCTGCTC    793

BSNT_05815___    794 TGCGCCTGAATCAACAATCATAA----    816
                     ..||..|          |.||||    
BPUM_3448___t    794 ATCGTTT----------TGATAAGTAG    810


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05815 and BPUM_3448

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
