Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05814 and BPUM_3445

See Amino acid alignment / Visit BSNT_05814 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:23
# Commandline: needle
#    -asequence dna-align/BSNT_05814___ywdF.1.24716.seq
#    -bsequence dna-align/BPUM_3445___ywdF.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05814___ywdF-BPUM_3445___ywdF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05814___ywdF-BPUM_3445___ywdF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05814___ywdF
# 2: BPUM_3445___ywdF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 863
# Identity:     583/863 (67.6%)
# Similarity:   583/863 (67.6%)
# Gaps:          91/863 (10.5%)
# Score: 1809.0
# 
#
#=======================================

BSNT_05814___      1 ATGAAGATTTC--TATCGTAATTGTGACCTATAATCGGATTCCG-GCTTT     47
                     |||||||||||  |||  ||||||||||..||||.||| .||.| ||..|
BPUM_3445___y      1 ATGAAGATTTCCTTAT--TAATTGTGACACATAACCGG-CTCAGCGCACT     47

BSNT_05814___     48 GTGTGAGCTTTTGGAGTCGATTTCCCGCCAGACCTTGAAGCCGTATGAAA     97
                     |||||||||..|.||.||.|||.|..|.||.|||.|..||||.|.|||||
BPUM_3445___y     48 GTGTGAGCTGCTTGAATCTATTACGAGACAAACCGTACAGCCCTTTGAAA     97

BSNT_05814___     98 TTATTATTGTGAATGATGCCGGGGAATCGGTCGTGCC--GGTCA---AAG    142
                     ||.|..|||||||||||||.||.||     .||||.|  |||||   |.|
BPUM_3445___y     98 TTGTGGTTGTGAATGATGCAGGAGA-----GCGTGTCGAGGTCATTCAGG    142

BSNT_05814___    143 CACTGTATCCGGAGCTGCCGAT-TGCTGTCATCAATTTAGAAAAGAA-CT    190
                     .|||.|||||.||.||.||||| .||| |.|||.|||||||..|||| .|
BPUM_3445___y    143 AACTCTATCCCGAACTTCCGATCCGCT-TGATCCATTTAGATGAGAATGT    191

BSNT_05814___    191 CGGGGCATGTGGCTGCGAGAAATGCCGGTGTAAAAGAGGCGTCTGGCGAT    240
                     | ..|||||||..|||.|||||.|..||.||....|||..|.|.||||||
BPUM_3445___y    192 C-CAGCATGTGAATGCTAGAAACGTGGGGGTGCGGGAGCTGACAGGCGAT    240

BSNT_05814___    241 TGCATTATGCTGTGTGATGACGATGATTTCTTTACGCCAGGGCATATCGA    290
                     ..|||||||||..|||||||||||||||..|||||.||..|.|||||.||
BPUM_3445___y    241 GTCATTATGCTTAGTGATGACGATGATTATTTTACACCTTGTCATATTGA    290

BSNT_05814___    291 ------GAAAATGGCAAAGGA-AATAGAAACGGCTGACTTCGTTCATTCT    333
                           ||..|.|||...||| .||       ||.||.||.||...||||
BPUM_3445___y    291 ACGGATGAGTAAGGCGCTGGAGGAT-------GCCGATTTTGTCTTTTCT    333

BSNT_05814___    334 GATGCGGAAATAGTTTCGTTTGAAGAGAAATACGGAACAA---GATATCC    380
                     |||||.|||||.||.||.||||||   |||.|.||.||.|   |.|..||
BPUM_3445___y    334 GATGCAGAAATTGTGTCATTTGAA---AAAAAAGGCACGACCCGCTTCCC    380

BSNT_05814___    381 AGTGTCACGGAAAT-TGTTTGCTTATACCGCTGACTA-TGAGGATATGAG    428
                     .|||||| .||..| |||||||.|||||.|||| ||| ||||||||||.|
BPUM_3445___y    381 GGTGTCA-AGACGTCTGTTTGCGTATACAGCTG-CTATTGAGGATATGCG    428

BSNT_05814___    429 AGTGTTTTCTACATACGTGCCGTCGGGCAGCATGTACAGACGTTTTCTGC    478
                     .||.|||||||||||.||.||.||.|||||.|||||||.|||.|.|.|.|
BPUM_3445___y    429 TGTCTTTTCTACATATGTTCCTTCCGGCAGTATGTACAAACGCTGTATAC    478

BSNT_05814___    479 ATGATGAAATCGGGTATTTCGATGCTGATGTGCACAATTACTGGGATTGG    528
                     |.|||||.||.||.|||||.|||.|.|...||||..||||||||||||||
BPUM_3445___y    479 ACGATGAGATTGGCTATTTTGATCCAGCGATGCATCATTACTGGGATTGG    528

BSNT_05814___    529 GATTTTTATCT------GCGCGCGGCCAAGGATTACCGGGTGAAGCGTGT    572
                     ||.|||| |||      .|.|||     ||.||..||||||.||.||.||
BPUM_3445___y    529 GACTTTT-TCTTACGTGTCACGC-----AGCATGCCCGGGTCAAACGAGT    572

BSNT_05814___    573 CCCTTGC-GCCAGTGTGATTTATGCCTTCAGTGAC-GCGGGAGACAATCA    620
                     .|| ||| |||||||||||.|||||.|||..|||| ||||..|| |||||
BPUM_3445___y    573 GCC-TGCTGCCAGTGTGATCTATGCGTTCTTTGACGGCGGTGGA-AATCA    620

BSNT_05814___    621 GTCTGCGGACCTTG--GCGCCAAGCGGAAGCAATATTTGGATCGTTTAAG    668
                     ||||...|||||||  |.|.|||  |.|||.|.|||||.|||..||||||
BPUM_3445___y    621 GTCTAGTGACCTTGGTGAGACAA--GAAAGAACTATTTAGATGATTTAAG    668

BSNT_05814___    669 TGAAAAGCACGGACTCGGGGAGCTGCCGACGAAAAACTTTGCCGTCCTGC    718
                     |||||||||.||.||.||.||..|||||||....||||||||.|||.|..
BPUM_3445___y    669 TGAAAAGCATGGGCTGGGCGATTTGCCGACAGCGAACTTTGCTGTCTTAT    718

BSNT_05814___    719 TTGAAGAGCCTGAGATGAAGAGGCGGGAAGCAAAAAGTGAAATGGTTTGG    768
                     |.|||||.||.|.||||||.|.|||.|||.||.|.|||||.||.||.|||
BPUM_3445___y    719 TAGAAGAACCAGCGATGAAAAAGCGAGAATCAGAGAGTGAGATTGTGTGG    768

BSNT_05814___    769 GATGGCGAGCC--TGTCTAT-TCCAGACT---TCATCGTTCGTAA-----    807
                     |||||..|.||  ||   || ||.|||||   .||.|...|..||     
BPUM_3445___y    769 GATGGAAAACCGATG---ATCTCAAGACTGGCACAGCAGACACAAGGAGG    815

BSNT_05814___    807 -------------    807
                                  
BPUM_3445___y    816 AGAACCCCAATGA    828


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05814 and BPUM_3445

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
