Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05807 and BPUM_3441
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:23
# Commandline: needle
# -asequence dna-align/BSNT_05807___ywdJ.1.24716.seq
# -bsequence dna-align/BPUM_3441___ywdJ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05807___ywdJ-BPUM_3441___ywdJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05807___ywdJ-BPUM_3441___ywdJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05807___ywdJ
# 2: BPUM_3441___ywdJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1427
# Identity: 869/1427 (60.9%)
# Similarity: 869/1427 (60.9%)
# Gaps: 223/1427 (15.6%)
# Score: 2396.0
#
#
#=======================================
BSNT_05807___ 1 GTGAAATTGGTTCTTGGCGCGCTGCAATGGACAGCGTTTATCATTGCTGC 50
.|||||.|..||.|.|||||..|.||.||||..||.|||.|.||.||.||
BPUM_3441___y 1 TTGAAACTATTTTTGGGCGCCATTCAGTGGATGGCATTTTTTATCGCAGC 50
BSNT_05807___ 51 GGCGATAGTTGTTCCGGTGGCGGTTGCCCAGTCGTTTCATCTGGATCACT 100
..|.||.|.|||.||..|.|||.||||.||..|.|||.|..||.|.||
BPUM_3441___y 51 TTCTATTGCTGTACCAATTGCGATTGCACAAGCATTTGAATTGAACCA-- 98
BSNT_05807___ 101 CAGATTCTGCA--------AGATTGATTCAAAGCACTTTTTTTGTACTGG 142
|| |||| || .||||||||||.||.||.|||..|||.|
BPUM_3441___y 99 -AG----TGCAGTCAGCGGAG-CTGATTCAAAGTACATTCTTTTCACTTG 142
BSNT_05807___ 143 GAATTGCCGCCGTCATTCAGTGTTTGAAAGGCCACAGACTGCCGATTAAT 192
|..|||..||..|..|.||.|||||....|||||.|..||.|||||.|||
BPUM_3441___y 143 GTCTTGTGGCGATGGTGCAATGTTTATGTGGCCATATGCTACCGATCAAT 192
BSNT_05807___ 193 GAAAGCCCAGC-CGGCTTGTGGTGGGGAGTGTATACGATTTACGCAGGGC 241
|||||.||||| .||||| ||||||||.||||||||..||||.|||||..
BPUM_3441___y 193 GAAAGTCCAGCGGGGCTT-TGGTGGGGTGTGTATACCCTTTATGCAGGTA 241
BSNT_05807___ 242 TGACGGGAACTGTGTTTGCGACATATGGAGACACACTGCGGGGTTTGCAG 291
||||.|||||..|.||||||||.|||...||.||.||||..|..||.||.
BPUM_3441___y 242 TGACAGGAACCATCTTTGCGACGTATCCTGAAACCCTGCAAGCCTTACAA 291
BSNT_05807___ 292 GGAGCTCTTCTTGTAAGCGCTGTATGTTTCTTTT---TGTTAAGTGTTTT 338
||||||.|..||.|.||.|||| .|||||||| |.||.|||.|.||
BPUM_3441___y 292 GGAGCTTTAATTTTTAGTGCTG---CTTTCTTTTTTATTTTTAGTTTATT 338
BSNT_05807___ 339 CAAGGTCATTGACAGACTTGCAAAATTGTTTACTCCGGTTGTAACGGGCG 388
.||..|||||.|..|.||.||....||.|||||.||.||.||.||.||
BPUM_3441___y 339 TAAAATCATTAATTGGCTCGCGTCGTTATTTACGCCAGTCGTCACAGG-- 386
BSNT_05807___ 389 TCTATTTA-TTGCTTC------TTGTCATGCAGCTGAGTCAGCCCATTAT 431
|||||| |||||.| ||||| |||.|.||||||||.||.||
BPUM_3441___y 387 --TATTTATTTGCTGCTATTAGTTGTC---CAGTTAAGTCAGCCGATCAT 431
BSNT_05807___ 432 AAAAGGAATTCTCGGAATCGGTTATCGACAGGACGG-------GGTGGAC 474
.|||||..|..|.||.|||||.||||| || ||||||.
BPUM_3441___y 432 GAAAGGGCTGATGGGCATCGGCTATCG-------GGGAAATCAGGTGGAT 474
BSNT_05807___ 475 GGTCTTGTATTTGGCCTGGCG------CTTGTTG------------TGAT 506
||.||.||.|||.||.||.|| .||.||| ||||
BPUM_3441___y 475 GGACTAGTCTTTTGCTTGTCGATCTTAATTATTGTCCTGACCTTCATGAT 524
BSNT_05807___ 507 CGCTGCCGCTTTTATAATGACAAATTCGAACATCATGTTTTTTAA-GCAA 555
|.|||||| ||||.|.|.| ||..|||| |||.
BPUM_3441___y 525 --CAGCCGCT----------CAAAATGGCA-------TTACTTAAGGCAG 555
BSNT_05807___ 556 TATTCTATTTTATTCG-CCTTGTTC-GGCGGGTGGGTGCTGTTTGC---- 599
|.||||.|.||.||.| ||||| | ||.||.|||.||.|.||.||
BPUM_3441___y 556 TTTTCTGTGTTGTTTGCCCTTG--CAGGAGGTTGGTTGTTATTCGCTCTA 603
BSNT_05807___ 600 ----GGCTGCCGGAGCGGCAAAGCCGATTGAAATGCCGGACCGGCTGTTT 645
|||| ||||||||||.||..|||.||.||.....|..||
BPUM_3441___y 604 CTCGGGCT--------GGCAAAGCCGGTTCGAATTCCAGAAAAAATTATT 645
BSNT_05807___ 646 CAGCTGCCTTCCC-----TGTTTCCTTTTGGGACACCGTTATTTAACAGC 690
.|| ||.|| |.||.||.||.||.||.||..|.|||.||||.
BPUM_3441___y 646 GAG-----TTTCCGAAGATTTTCCCATTCGGAACGCCAGTCTTTGACAGT 690
BSNT_05807___ 691 GGCCTGATCATCACTTCTATTTTTATTACCATCTTGCTGATTGTGAATAT 740
||..||.|..||||.||..||||.|||||.||.||.||.|||||||||||
BPUM_3441___y 691 GGATTGCTTGTCACGTCCTTTTTCATTACGATATTACTCATTGTGAATAT 740
BSNT_05807___ 741 GCTGGCGAGCAT--GAAGGTTGTGGACATCGCCGTGAAAAAATTCAGCAA 788
||||||.||.|| ||| |||||||.|...|.|||||...|||..|..|
BPUM_3441___y 741 GCTGGCAAGTATTCGAA--TTGTGGAAAGTTCAGTGAAGGCATTTGGTGA 788
BSNT_05807___ 789 ACAGCCTGA-TGGAA---AGCATCATGAACGCCATGCCGGTTTTGCCGCT 834
||.||.||| .|||| ||| .||.|..||.|||||||..||.
BPUM_3441___y 789 ACTGCGTGAGCGGAAGAGAGC-------TCGTCCGGCTGGTTTTGTTGCA 831
BSNT_05807___ 835 TCATTCAGCCATCTGCTTAGCGGTTTGACGGGAGCTATTGCGCCTGTTCC 884
.||||..|.||..|.||.||.||.||||..|||||.|||||||||||.||
BPUM_3441___y 832 GCATTTGGTCACTTACTGAGTGGATTGATCGGAGCGATTGCGCCTGTACC 881
BSNT_05807___ 885 GATTTCGGGAGCCGCGGGTTTTATTGAAACGACCAAAATGCCTTCTAAAA 934
.|||||.||.||.||.||.|||||..|.||.||.|||||.||.||.|.||
BPUM_3441___y 882 TATTTCCGGGGCAGCAGGATTTATCCAGACAACGAAAATTCCATCGAGAA 931
BSNT_05807___ 935 AACCGTTTATGCTCGGCAGTATTTTGGTTATCG---TGATCAGCGTAATC 981
|.||.|||.|..|.||.|| ||||.|.||.| |.||.||..||.||
BPUM_3441___y 932 AGCCTTTTTTCATAGGAAG---TTTGCTCATTGTACTCATTAGTTTATTC 978
BSNT_05807___ 982 CCGTTTTTTATGAATACGTTTGCGAGCC----TGCCGTCACCCGTTGGAT 1027
||..|..|.|||| .|.|||.| .|| ||||.|||||.||.||..
BPUM_3441___y 979 CCACTGCTCATGA--GCTTTTTC--TCCGCATTGCCATCACCTGTGGGGC 1024
BSNT_05807___ 1028 TTGCGGTGAATTTTGTTGTGTTCTCCGCAATG--------GGCG--GTCT 1067
||||.||.||.|||||.||.||||||.||||| .||| ||||
BPUM_3441___y 1025 TTGCTGTAAACTTTGTGGTATTCTCCTCAATGATTGGAATTGCGATGTCT 1074
BSNT_05807___ 1068 GGCCTTTGCCGAATTTGATTCA-TATGAGAAAGAAGAATCAAAAA----- 1111
||.||.|| ||| ||||||||||||| |||
BPUM_3441___y 1075 ----------GAGTTCGA-TCAGTATGAGAAAGAAG------AAATTCCG 1107
BSNT_05807___ 1112 -GGGTGAGGTCTATCATCGGCATCTCACTGC-----TGACAGGGGTCGGT 1155
||.|..|.|.|.||.|.||.|| ||| |..||||.||.||.
BPUM_3441___y 1108 CGGATTCGCTTTGTCTTAGGAAT-----TGCCGTTTTAGCAGGTGTAGGG 1152
BSNT_05807___ 1156 ATCATGTTTGTTCC----TGAAACTGCGTT-AAAGGGATTGCATCCGGTA 1200
...||||||||.|| .|| ||.|| |||||.| |||||||.||.
BPUM_3441___y 1153 GCGATGTTTGTACCGCAGGGA----GCCTTGAAAGGCA-TGCATCCTGTG 1197
BSNT_05807___ 1201 TTTATTTCTCTATTAAGCAACGGGCTCGTATTAGGGACGCTTGCTGCAAT 1250
.|||||||..||||||||||.||.||.||..||||.||.||...|||.||
BPUM_3441___y 1198 CTTATTTCATTATTAAGCAATGGACTTGTTCTAGGAACACTCATTGCGAT 1247
BSNT_05807___ 1251 AGCTGCTGA-CCAGTTCCAGCTTTGGCGCAGGAGA---AAATCCGACAAT 1296
.||.|..|| |.|||| ||.|..||.|.||.| ||||||||||||
BPUM_3441___y 1248 CGCGGTCGATCAAGTT----CTGTTACGAAAGAAAAAGAAATCCGACAAT 1293
BSNT_05807___ 1297 CTCGTGTCAACGGAGAACAAACATTGA 1323
||||||||||||.|.
BPUM_3441___y 1294 CTCGTGTCAACGTAA------------ 1308
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