Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05807 and BPUM_3441

See Amino acid alignment / Visit BSNT_05807 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:23
# Commandline: needle
#    -asequence dna-align/BSNT_05807___ywdJ.1.24716.seq
#    -bsequence dna-align/BPUM_3441___ywdJ.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05807___ywdJ-BPUM_3441___ywdJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05807___ywdJ-BPUM_3441___ywdJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05807___ywdJ
# 2: BPUM_3441___ywdJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1427
# Identity:     869/1427 (60.9%)
# Similarity:   869/1427 (60.9%)
# Gaps:         223/1427 (15.6%)
# Score: 2396.0
# 
#
#=======================================

BSNT_05807___      1 GTGAAATTGGTTCTTGGCGCGCTGCAATGGACAGCGTTTATCATTGCTGC     50
                     .|||||.|..||.|.|||||..|.||.||||..||.|||.|.||.||.||
BPUM_3441___y      1 TTGAAACTATTTTTGGGCGCCATTCAGTGGATGGCATTTTTTATCGCAGC     50

BSNT_05807___     51 GGCGATAGTTGTTCCGGTGGCGGTTGCCCAGTCGTTTCATCTGGATCACT    100
                     ..|.||.|.|||.||..|.|||.||||.||..|.|||.|..||.|.||  
BPUM_3441___y     51 TTCTATTGCTGTACCAATTGCGATTGCACAAGCATTTGAATTGAACCA--     98

BSNT_05807___    101 CAGATTCTGCA--------AGATTGATTCAAAGCACTTTTTTTGTACTGG    142
                      ||    ||||        || .||||||||||.||.||.|||..|||.|
BPUM_3441___y     99 -AG----TGCAGTCAGCGGAG-CTGATTCAAAGTACATTCTTTTCACTTG    142

BSNT_05807___    143 GAATTGCCGCCGTCATTCAGTGTTTGAAAGGCCACAGACTGCCGATTAAT    192
                     |..|||..||..|..|.||.|||||....|||||.|..||.|||||.|||
BPUM_3441___y    143 GTCTTGTGGCGATGGTGCAATGTTTATGTGGCCATATGCTACCGATCAAT    192

BSNT_05807___    193 GAAAGCCCAGC-CGGCTTGTGGTGGGGAGTGTATACGATTTACGCAGGGC    241
                     |||||.||||| .||||| ||||||||.||||||||..||||.|||||..
BPUM_3441___y    193 GAAAGTCCAGCGGGGCTT-TGGTGGGGTGTGTATACCCTTTATGCAGGTA    241

BSNT_05807___    242 TGACGGGAACTGTGTTTGCGACATATGGAGACACACTGCGGGGTTTGCAG    291
                     ||||.|||||..|.||||||||.|||...||.||.||||..|..||.||.
BPUM_3441___y    242 TGACAGGAACCATCTTTGCGACGTATCCTGAAACCCTGCAAGCCTTACAA    291

BSNT_05807___    292 GGAGCTCTTCTTGTAAGCGCTGTATGTTTCTTTT---TGTTAAGTGTTTT    338
                     ||||||.|..||.|.||.||||   .||||||||   |.||.|||.|.||
BPUM_3441___y    292 GGAGCTTTAATTTTTAGTGCTG---CTTTCTTTTTTATTTTTAGTTTATT    338

BSNT_05807___    339 CAAGGTCATTGACAGACTTGCAAAATTGTTTACTCCGGTTGTAACGGGCG    388
                     .||..|||||.|..|.||.||....||.|||||.||.||.||.||.||  
BPUM_3441___y    339 TAAAATCATTAATTGGCTCGCGTCGTTATTTACGCCAGTCGTCACAGG--    386

BSNT_05807___    389 TCTATTTA-TTGCTTC------TTGTCATGCAGCTGAGTCAGCCCATTAT    431
                       |||||| |||||.|      |||||   |||.|.||||||||.||.||
BPUM_3441___y    387 --TATTTATTTGCTGCTATTAGTTGTC---CAGTTAAGTCAGCCGATCAT    431

BSNT_05807___    432 AAAAGGAATTCTCGGAATCGGTTATCGACAGGACGG-------GGTGGAC    474
                     .|||||..|..|.||.|||||.|||||       ||       ||||||.
BPUM_3441___y    432 GAAAGGGCTGATGGGCATCGGCTATCG-------GGGAAATCAGGTGGAT    474

BSNT_05807___    475 GGTCTTGTATTTGGCCTGGCG------CTTGTTG------------TGAT    506
                     ||.||.||.|||.||.||.||      .||.|||            ||||
BPUM_3441___y    475 GGACTAGTCTTTTGCTTGTCGATCTTAATTATTGTCCTGACCTTCATGAT    524

BSNT_05807___    507 CGCTGCCGCTTTTATAATGACAAATTCGAACATCATGTTTTTTAA-GCAA    555
                       |.||||||          ||||.|.|.|       ||..|||| |||.
BPUM_3441___y    525 --CAGCCGCT----------CAAAATGGCA-------TTACTTAAGGCAG    555

BSNT_05807___    556 TATTCTATTTTATTCG-CCTTGTTC-GGCGGGTGGGTGCTGTTTGC----    599
                     |.||||.|.||.||.| |||||  | ||.||.|||.||.|.||.||    
BPUM_3441___y    556 TTTTCTGTGTTGTTTGCCCTTG--CAGGAGGTTGGTTGTTATTCGCTCTA    603

BSNT_05807___    600 ----GGCTGCCGGAGCGGCAAAGCCGATTGAAATGCCGGACCGGCTGTTT    645
                         ||||        ||||||||||.||..|||.||.||.....|..||
BPUM_3441___y    604 CTCGGGCT--------GGCAAAGCCGGTTCGAATTCCAGAAAAAATTATT    645

BSNT_05807___    646 CAGCTGCCTTCCC-----TGTTTCCTTTTGGGACACCGTTATTTAACAGC    690
                     .||     ||.||     |.||.||.||.||.||.||..|.|||.||||.
BPUM_3441___y    646 GAG-----TTTCCGAAGATTTTCCCATTCGGAACGCCAGTCTTTGACAGT    690

BSNT_05807___    691 GGCCTGATCATCACTTCTATTTTTATTACCATCTTGCTGATTGTGAATAT    740
                     ||..||.|..||||.||..||||.|||||.||.||.||.|||||||||||
BPUM_3441___y    691 GGATTGCTTGTCACGTCCTTTTTCATTACGATATTACTCATTGTGAATAT    740

BSNT_05807___    741 GCTGGCGAGCAT--GAAGGTTGTGGACATCGCCGTGAAAAAATTCAGCAA    788
                     ||||||.||.||  |||  |||||||.|...|.|||||...|||..|..|
BPUM_3441___y    741 GCTGGCAAGTATTCGAA--TTGTGGAAAGTTCAGTGAAGGCATTTGGTGA    788

BSNT_05807___    789 ACAGCCTGA-TGGAA---AGCATCATGAACGCCATGCCGGTTTTGCCGCT    834
                     ||.||.||| .||||   |||       .||.|..||.|||||||..||.
BPUM_3441___y    789 ACTGCGTGAGCGGAAGAGAGC-------TCGTCCGGCTGGTTTTGTTGCA    831

BSNT_05807___    835 TCATTCAGCCATCTGCTTAGCGGTTTGACGGGAGCTATTGCGCCTGTTCC    884
                     .||||..|.||..|.||.||.||.||||..|||||.|||||||||||.||
BPUM_3441___y    832 GCATTTGGTCACTTACTGAGTGGATTGATCGGAGCGATTGCGCCTGTACC    881

BSNT_05807___    885 GATTTCGGGAGCCGCGGGTTTTATTGAAACGACCAAAATGCCTTCTAAAA    934
                     .|||||.||.||.||.||.|||||..|.||.||.|||||.||.||.|.||
BPUM_3441___y    882 TATTTCCGGGGCAGCAGGATTTATCCAGACAACGAAAATTCCATCGAGAA    931

BSNT_05807___    935 AACCGTTTATGCTCGGCAGTATTTTGGTTATCG---TGATCAGCGTAATC    981
                     |.||.|||.|..|.||.||   ||||.|.||.|   |.||.||..||.||
BPUM_3441___y    932 AGCCTTTTTTCATAGGAAG---TTTGCTCATTGTACTCATTAGTTTATTC    978

BSNT_05807___    982 CCGTTTTTTATGAATACGTTTGCGAGCC----TGCCGTCACCCGTTGGAT   1027
                     ||..|..|.||||  .|.|||.|  .||    ||||.|||||.||.||..
BPUM_3441___y    979 CCACTGCTCATGA--GCTTTTTC--TCCGCATTGCCATCACCTGTGGGGC   1024

BSNT_05807___   1028 TTGCGGTGAATTTTGTTGTGTTCTCCGCAATG--------GGCG--GTCT   1067
                     ||||.||.||.|||||.||.||||||.|||||        .|||  ||||
BPUM_3441___y   1025 TTGCTGTAAACTTTGTGGTATTCTCCTCAATGATTGGAATTGCGATGTCT   1074

BSNT_05807___   1068 GGCCTTTGCCGAATTTGATTCA-TATGAGAAAGAAGAATCAAAAA-----   1111
                               ||.||.|| ||| |||||||||||||      |||     
BPUM_3441___y   1075 ----------GAGTTCGA-TCAGTATGAGAAAGAAG------AAATTCCG   1107

BSNT_05807___   1112 -GGGTGAGGTCTATCATCGGCATCTCACTGC-----TGACAGGGGTCGGT   1155
                      ||.|..|.|.|.||.|.||.||     |||     |..||||.||.||.
BPUM_3441___y   1108 CGGATTCGCTTTGTCTTAGGAAT-----TGCCGTTTTAGCAGGTGTAGGG   1152

BSNT_05807___   1156 ATCATGTTTGTTCC----TGAAACTGCGTT-AAAGGGATTGCATCCGGTA   1200
                     ...||||||||.||    .||    ||.|| |||||.| |||||||.||.
BPUM_3441___y   1153 GCGATGTTTGTACCGCAGGGA----GCCTTGAAAGGCA-TGCATCCTGTG   1197

BSNT_05807___   1201 TTTATTTCTCTATTAAGCAACGGGCTCGTATTAGGGACGCTTGCTGCAAT   1250
                     .|||||||..||||||||||.||.||.||..||||.||.||...|||.||
BPUM_3441___y   1198 CTTATTTCATTATTAAGCAATGGACTTGTTCTAGGAACACTCATTGCGAT   1247

BSNT_05807___   1251 AGCTGCTGA-CCAGTTCCAGCTTTGGCGCAGGAGA---AAATCCGACAAT   1296
                     .||.|..|| |.||||    ||.|..||.|.||.|   ||||||||||||
BPUM_3441___y   1248 CGCGGTCGATCAAGTT----CTGTTACGAAAGAAAAAGAAATCCGACAAT   1293

BSNT_05807___   1297 CTCGTGTCAACGGAGAACAAACATTGA   1323
                     ||||||||||||.|.            
BPUM_3441___y   1294 CTCGTGTCAACGTAA------------   1308


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