Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05804 and BPUM_3438

See Amino acid alignment / Visit BSNT_05804 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:23
# Commandline: needle
#    -asequence dna-align/BSNT_05804___ywdL.1.24716.seq
#    -bsequence dna-align/BPUM_3438___gerQ.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05804___ywdL-BPUM_3438___gerQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05804___ywdL-BPUM_3438___gerQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05804___ywdL
# 2: BPUM_3438___gerQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 602
# Identity:     373/602 (62.0%)
# Similarity:   373/602 (62.0%)
# Gaps:         115/602 (19.1%)
# Score: 1095.0
# 
#
#=======================================

BSNT_05804___      1 ATGAAACCGAAAAAAAATCAATATCAGCAA-ATGCAGGCATTT-----GA     44
                     ||||||..|   ||||||||||.|..|||| .|.|.||  |||     |.
BPUM_3438___g      1 ATGAAATTG---AAAAATCAATTTGGGCAAGGTTCGGG--TTTCGAAGGT     45

BSNT_05804___     45 TAATAT----GCAGGGGTATCAGCCTCAGTTTGGCGCCAACCCGTACC--     88
                     .||.||    ||        ||||..||.|.|||.||.||.|||||.|  
BPUM_3438___g     46 CAAGATTTTCGC--------CAGCAACAATATGGAGCAAATCCGTATCCT     87

BSNT_05804___     89 -CGCAGCA------------AGGCCAAGGCT-CACAAATGCAG---CCAA    121
                      |||||||            ||.||    || |.||||.||||   |.||
BPUM_3438___g     88 GCGCAGCAGATGGGTTATTCAGTCC----CTCCCCAAACGCAGGGTCAAA    133

BSNT_05804___    122 TGGGGATGCAGCCAATGATGCCAATGCAGCAGGGA----CAGCAAGGAC-    166
                     ||          |||.||  |.|||||||||||||    ||.|||.|.| 
BPUM_3438___g    134 TG----------CAAGGA--CAAATGCAGCAGGGATTTTCACCAATGCCG    171

BSNT_05804___    167 -------------AACAAGGACAGCAGGG-ATTTGGATTCCCGGGC-CAG    201
                                  .||||||...|||||| ||            || .||
BPUM_3438___g    172 TCTACTGGTTCTTCACAAGGGGGGCAGGGCAT------------GCAGAG    209

BSNT_05804___    202 CAGCAGGGCGGCGGTTTTCAAATTCCATCGGGGCC----TACACCGTCAG    247
                     |||| ||||.||.| |.|||||||||.||.||.||    ||     ||||
BPUM_3438___g    210 CAGC-GGGCAGCCG-TATCAAATTCCTTCTGGACCCATTTA-----TCAG    252

BSNT_05804___    248 GACCGGGCCAAAGCGTTCCCGG-CATGCTGCCTGTTGAGGAATCTTACAT    296
                             ||.|..||..|.|| || ||||||..|.||..|.||.||.||
BPUM_3438___g    253 --------CAGAATGTCACTGGTCA-GCTGCCAATCGAACAGTCCTATAT    293

BSNT_05804___    297 CGAGAATATTTTGCGCCTGAATCGGGGAAAAACGGCCACCATTTATATGA    346
                     .||.||||||||.||..||||.||.||.||....|||||.||||||||||
BPUM_3438___g    294 TGAAAATATTTTACGATTGAACCGCGGCAAGGTAGCCACGATTTATATGA    343

BSNT_05804___    347 CATTTGAAAACAGCAAGGAATGGGGCTCGAAGATTTTTCGCGGCGTCATC    396
                     |.|||||....||.|||||.|||..||||||||||||..|.||||||||.
BPUM_3438___g    344 CGTTTGAGGCAAGTAAGGAGTGGAACTCGAAGATTTTCAGAGGCGTCATT    393

BSNT_05804___    397 GAAGCTGCAGGCCGGGATCACATTATTATCAGCGACCCGAAATCAGGAAC    446
                     |||||||||||.||.||.|||||||||||.|||||....||..|.|||||
BPUM_3438___g    394 GAAGCTGCAGGACGTGACCACATTATTATTAGCGATAACAAGACGGGAAC    443

BSNT_05804___    447 ACGCTACCTGCTCCTGACAATCTACCTCGATTACATTACATTTGATGAAG    496
                     |||.|||.|.||..|.||.|||||.||.|||||||||||.|||||||..|
BPUM_3438___g    444 ACGATACTTACTATTAACGATCTATCTTGATTACATTACGTTTGATGGGG    493

BSNT_05804___    497 AAATTGCTTATACG--TATCCATATTCCATGGCGTCCTATTCGCCAAGAT    544
                     |||||  ..|||||  ||||||||.||.|||.|..|.|||||.||.||.|
BPUM_3438___g    494 AAATT--CAATACGACTATCCATACTCTATGTCCACGTATTCTCCGAGGT    541

BSNT_05804___    545 AA    546
                     |.
BPUM_3438___g    542 AG    543


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