Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05798 and BPUM_3434
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:22
# Commandline: needle
# -asequence dna-align/BSNT_05798___spsC.1.24716.seq
# -bsequence dna-align/BPUM_3434___spsC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05798___spsC-BPUM_3434___spsC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05798___spsC-BPUM_3434___spsC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05798___spsC
# 2: BPUM_3434___spsC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1235
# Identity: 815/1235 (66.0%)
# Similarity: 815/1235 (66.0%)
# Gaps: 121/1235 ( 9.8%)
# Score: 2535.5
#
#
#=======================================
BSNT_05798___ 1 ATGGTGCAAAAGAGAAATCATTTTCTCCCTTACTCATTGCCGTTAATCGG 50
||||...||||||||.|.||.|||||.|||||..|..|||||||.||.|.
BPUM_3434___s 1 ATGGAAAAAAAGAGAGAACAATTTCTTCCTTATGCCCTGCCGTTGATTGA 50
BSNT_05798___ 51 TAAGGAAGAAATTCAGGAGGTTACAGAAACGCTTGAATCGGGATGGCTTT 100
..|||||||||||.||||.||.|..|.|||..|..||||.||.|||||.|
BPUM_3434___s 51 GCAGGAAGAAATTGAGGAAGTCATTGGAACATTAAAATCCGGCTGGCTGT 100
BSNT_05798___ 101 CTAAAGGCCCGAAGGTTCAG-CAGTTTGAAAAAGAGTTT--GCCGCGTTT 147
|.|..||.||.||.| |||| |||||||||.|||||||| |..|| |
BPUM_3434___s 101 CAACCGGACCAAAAG-TCAGACAGTTTGAAGAAGAGTTTCGGAAGC---T 146
BSNT_05798___ 148 GTC-GGGGCGAAGCACGCCGTGGCGGTGAATTCATGTACCGCAGCTTTAT 196
|.| ||.||.||.||.||..|.||.||.|||||||||||.||.|||||||
BPUM_3434___s 147 GACTGGTGCAAAACATGCGATTGCTGTCAATTCATGTACGGCTGCTTTAT 196
BSNT_05798___ 197 TTTTGGCTTTGAAAGCAAAAGGGATCGGGCCCGGGGACGAGGTCATTACC 246
||||.||.||.||.||.|.||||||.|||...|||||.|||||.|||||.
BPUM_3434___s 197 TTTTAGCCTTAAAGGCTAGAGGGATTGGGAATGGGGATGAGGTGATTACA 246
BSNT_05798___ 247 TCTCCGCTTACGTTCAGCTCGACCGCCAATACGATTATTCATACGGGAGC 296
.|.||.||.||.||..||.|.||.|||||||||||.||||||||.||.||
BPUM_3434___s 247 ACGCCTCTGACATTTTGCGCAACAGCCAATACGATCATTCATACAGGGGC 296
BSNT_05798___ 297 GACGCCTGTGTTTGCGGATATTGACCAAAACACGCTCAATATTGACCCGG 346
..|.|||||.||||..||||||||.|.|...||.||.||..|.||..|.|
BPUM_3434___s 297 AGCTCCTGTATTTGTCGATATTGATCCAGCGACACTTAACCTCGATGCAG 346
BSNT_05798___ 347 TAAAGCTTGAGGCGGCCGTCACACCGCGAACGAAAGCAGTTGTGCCCGTC 396
..||.||.||.|.|||..|.|||||.|..||.|||||..||||.||.||.
BPUM_3434___s 347 AGAAACTAGAAGAGGCGATTACACCACATACAAAAGCCATTGTCCCTGTT 396
BSNT_05798___ 397 CACTTTGGCGGGCAGTCCTGCGATATGGATGCAATATTGGCTATTGCCCA 446
||.||||..||.||.||.|||||||||||....||.||.|..|||||..|
BPUM_3434___s 397 CATTTTGCTGGCCAATCGTGCGATATGGACCGGATTTTAGAAATTGCTAA 446
BSNT_05798___ 447 AAATCATGGTTTATTCGTGCTGGAGGATGCGGCACATGCGGTATATACGA 496
|||..|.|.|.||||.|||||.||||||||.||.|||||..|..||||||
BPUM_3434___s 447 AAAGTACGATCTATTTGTGCTCGAGGATGCCGCTCATGCCCTGCATACGA 496
BSNT_05798___ 497 CTTATAA---GCAAAGAATGATCGGTTCTATCGGAGATGCAACGGCATTC 543
|.|||.| ||| ...|||.||..|.||.||||||||.||.||.||.
BPUM_3434___s 497 CGTATCACGGGCA---GCCGATTGGAGCGATTGGAGATGCGACTGCCTTT 543
BSNT_05798___ 544 AGCTTTTACGCCACCAAAAACCTCGCGACAGGGGAAGGCGGCATGCTGAC 593
||.|||||.||.||.||||||.|.|||||.||||||||||||||||||||
BPUM_3434___s 544 AGTTTTTATGCGACGAAAAACATAGCGACCGGGGAAGGCGGCATGCTGAC 593
BSNT_05798___ 594 GACTGATGATGAGGAGCTTGCCGAT--------AAGATCCGGGTGCTAAG 635
|||..||||||..|..||.|||||| ||.| || ||
BPUM_3434___s 594 GACAAATGATGGTGCACTAGCCGATCGAATTAGAAAA--------CT-AG 634
BSNT_05798___ 636 C-CTTCACGGCATGAGTAAAGCCGCATGGAACCGTTATTCTTCAAATGGC 684
| ||.||.||.|||||.||.|..||||||||.||||||.....|||.||.
BPUM_3434___s 635 CACTCCATGGGATGAGCAAGGGAGCATGGAATCGTTATGGAGAAAAAGGA 684
BSNT_05798___ 685 AGCTGGTACTATGAAGTCGAATCGCCCGGCTATAAGATGAATATGTTTGA 734
|..||||||||.||.|||||....||.|||||||||||||||||||||||
BPUM_3434___s 685 ACGTGGTACTACGAGGTCGAGGAACCTGGCTATAAGATGAATATGTTTGA 734
BSNT_05798___ 735 TTTGCAGGCGGCCCTCGGACTTCATCAGCTAAAACGGCTGGATGATATGC 784
|.|||||||..|..|.||||||...||||||||.||.||.||||||||||
BPUM_3434___s 735 TGTGCAGGCATCGTTAGGACTTGTCCAGCTAAACCGTCTAGATGATATGC 784
BSNT_05798___ 785 AGAAACGGAGAGAAGAGATTGCCGGCCGCTATCAAAC-----CGCTTTTC 829
|...||||||||||...|||| ||..|.||.|| .||.||||
BPUM_3434___s 785 AAGCACGGAGAGAACTAATTG-----CGAAAGCATACAATCAGGCATTTC 829
BSNT_05798___ 830 -AGCAGATTCCGGGACTGATCACGCCGTTTGTCCATGATGACGGCAGGCA 878
|..|||..|.||| ||||||...|||..|||||||.|.||.|||||.||
BPUM_3434___s 830 AAAAAGAAACAGGG-CTGATCCTACCGCCTGTCCATCAAGAGGGCAGACA 878
BSNT_05798___ 879 CGCCTGGCATCTATATGTTCTGCAAGTTGA--TGAAAAAAAGGCCGGGGT 926
.||.||||||.|||||||.||||||||.|| .||||.|| |..|
BPUM_3434___s 879 TGCATGGCATTTATATGTACTGCAAGTGGACCCGAAAGAA------GCAT 922
BSNT_05798___ 927 T------ACGCG--CAGCGAAATGATTACGGCTTT----AAAGGATAAAT 964
| |||.| .|||..|.|||| ||| || |||| |.|
BPUM_3434___s 923 TCATCACACGTGATGAGCTGATTGAT--CGG--TTGCAAAAAG----ACT 964
BSNT_05798___ 965 ACAATATCGGCACTAGCGTTCATTTTATTCCAGTACACATTCATCCGTAT 1014
|.||.||||||||.||.|||||.|||||.||.||.||..|.|||||.||.
BPUM_3434___s 965 ATAAGATCGGCACGAGTGTTCACTTTATCCCTGTTCATTTGCATCCATAC 1014
BSNT_05798___ 1015 TATCA--AAAGCAATTTGGATATAAGGA------AGCGGACTTTCCGAAT 1056
||||| |||.| |||.|..| ||.|||.||
BPUM_3434___s 1015 TATCAACAAACC--------TATCATTATTCACCAGAGGATTT------- 1049
BSNT_05798___ 1057 GCCATGAAT--------TACTATAAACGAACCCTTTCTCTCCCGCTCTAT 1098
||.|||.| |||||.||.||.|||||.||.||.||.||.||.
BPUM_3434___s 1050 -CCCTGAGTCACTCGCATACTACAAGCGGACCCTCTCACTGCCTCTTTAC 1098
BSNT_05798___ 1099 CCATCAATGTCTGACGACGATGTAGATGATGTCATTGAAGCTGTGCGGGA 1148
|||...|||.|.||.||.|||||..|.||||||||.|..||.|||..|..
BPUM_3434___s 1099 CCAAGTATGACAGATGAAGATGTGCAGGATGTCATCGCTGCGGTGGTGTC 1148
BSNT_05798___ 1149 TATCGTAAAAG------GGGC-------TGATTAA 1170
|||..|||||| .||| |||
BPUM_3434___s 1149 TATTTTAAAAGAACAGAAGGCATCTTTATGA---- 1179
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