Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05796 and BPUM_3433
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:22
# Commandline: needle
# -asequence dna-align/BSNT_05796___spsD.1.24716.seq
# -bsequence dna-align/BPUM_3433___spsD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05796___spsD-BPUM_3433___spsD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05796___spsD-BPUM_3433___spsD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05796___spsD
# 2: BPUM_3433___spsD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1072
# Identity: 513/1072 (47.9%)
# Similarity: 513/1072 (47.9%)
# Gaps: 398/1072 (37.1%)
# Score: 948.5
#
#
#=======================================
BSNT_05796___ 1 ------------------------------GTGT---------------- 4
||||
BPUM_3433___s 1 ATGAAGGTCGTTCATGCAATAGACGATCAGGTGTTATCCGTTTGGCTTGA 50
BSNT_05796___ 5 ---ATACGGTAAAAGAAAATGTCTCCAAAGAGTTGATTGAGGAATTTCTC 51
|||||||.|| ||| |||||..||.|
BPUM_3433___s 51 GAAATACGGTCAA------------CAA-------ATTGAACAAAT---- 77
BSNT_05796___ 52 CAAAGCCGACAGCTTACACTGGATGTTCCGTATCAATTTTCCCTCGGCCT 101
.|||| |||| || |.||.||| |||||
BPUM_3433___s 78 GAAAG------GCTT-CA-------------AACAGTTT------GGCCT 101
BSNT_05796___ 102 TTTTGAAAACAG-------CAGGCTCCAAGGCGTATTGCTTTACGAAGAT 144
|.|| || || ||||.|||..||..||.|.|||||
BPUM_3433___s 102 TGTT------AGTGGCGCCCA-GCTCAAAGCGGTGCTGTTATACGA---- 140
BSNT_05796___ 145 TCTTTG-------TGGGAAAGCAAGG------TGCTTCAGAAGA-AAGTC 180
.|| ||||||||| || || .||||.|.| ...||
BPUM_3433___s 141 ---CTGGTCAAAATGGGAAAGC--GGCATATTTG-ATCAGCATATTTTTC 184
BSNT_05796___ 181 A--TGAACGTCAAACTTCTTGCGGCAAAT-AGT-ACCGGGCAGCTAAAGA 226
| |||| || ||||||||..| ||| | |||.||
BPUM_3433___s 185 ATGTGAA-GT--------TTGCGGCAGCTGAGTCA----GCATCT----- 216
BSNT_05796___ 227 GGCTGTTT---GAAGCTTTTTATACTGTACGC-----CAAATGGATG--- 265
||| ||| ||| ||.|| .|.|||| |||.||||||
BPUM_3433___s 217 -GCT-TTTCAGGAA----TTGAT--GGAACGCTTCATCAATTGGATGAGA 258
BSNT_05796___ 266 ------AAACG-GATTTTATCTTTGTCCGTGTTCCCGCTGAAGATATCGG 308
|||.| ||||||.|||||.|.|||.| ||||| |||
BPUM_3433___s 259 TCAGAAAAATGCGATTTTTTCTTTTTACGTCT------TGAAG----CGG 298
BSNT_05796___ 309 -AGCCGCGCATGT-----GATACAGCAGCAGCC---ATCCTCTTAC-TTT 348
|| |||| .|.||.|||.| ||| |..||.|.|| |.|
BPUM_3433___s 299 CAG------ATGTTGAAAAAAACCGCATC-GCCCAAAGGCTGTCACATGT 341
BSNT_05796___ 349 GTCGGGAGTTTGCTGAAGCTGGCGATGCCTC---CGTCTTTTTATGACAA 395
|| |.|.|| || |||| |.||| |||||| .|
BPUM_3433___s 342 GT----ACTATG-TG-----GGCG--GTCTCACTCGTCTT--------GA 371
BSNT_05796___ 396 AACACCGCCATTTTT-----------------------TGAA---CTGGG 419
|.||||||| |.|| |||| .|||.
BPUM_3433___s 372 AGCACCGCC--TGTTCACATGGAAATGCCATCAACAAGTGAAGATGTGGT 419
BSNT_05796___ 420 C--CCGCCTGAGCCCGGA-GACACAGAAGCGATATG-TGAGCTGGCCCGA 465
| |.|.||| ||||| | |.|||..|||.| ||||..|| .|.
BPUM_3433___s 420 CATCAGTCTG---CCGGATG----AAAAGGAATACGATGAGGCGG--TGT 460
BSNT_05796___ 466 GACTCGTTTA-CA----------AAAAGCAGATAT----TTTCAGGATCC 500
.|||||.||| || ||||||.|.||| || |||||
BPUM_3433___s 461 CACTCGCTTATCAGGCTTTTGTGAAAAGCCGGTATGCACTT----GATCC 506
BSNT_05796___ 501 TCATCTCAGCC------GCGATGCAGCAAACAAAATATTTCAGGAGTGGA 544
| .|.|.||.| |||.|.|||| |..|.|||||.||.||||
BPUM_3433___s 507 T-TTTTTAGACCAGAATGCGGTCCAGC-----ATTTCTTTCAAGAATGGA 550
BSNT_05796___ 545 CACGAAACAATCTGAATGGAAGGGCGGCGGTCAATATTGTCGCTAAACAC 594
....|||.|||.||...|||.|.||.|...|||||.|.|..||.||....
BPUM_3433___s 551 TGAAAAATAATTTGCTCGGACGTGCAGATATCAATCTCGCAGCAAAGGTG 600
BSNT_05796___ 595 AATGGCGAGGTCATCGGCT--ATCTTC-AGGGCTTATCAAGAGATGATGA 641
||||..||..||.|.||.| ||| | ||||.|.||.||| ||.|||||
BPUM_3433___s 601 AATGATGAAATCGTTGGTTTGATC--CAAGGGTTGATAAAG-GACGATGA 647
BSNT_05796___ 642 ATGCATTCTCGATTTGATGGCTGTAAAGCCGGGATTTG---AAGGAAAAC 688
||...|.||.|||||..|.||..|.|..|| |..|| ||||||||.
BPUM_3433___s 648 ATTGGTGCTTGATTTACTTGCCATTAGACC---AGATGCACAAGGAAAAG 694
BSNT_05796___ 689 G------------------TATTGCGTTTCATTTATTGGCGAA----TCT 716
| .||.|| |.|||.||| |||
BPUM_3433___s 695 GACTCGGAAAGAAGCTGGTGATGGC---------AATGGTGAAAGCCTCT 735
BSNT_05796___ 717 CAT-AGAACAACCGGAG---ACCCAGAAGCATAGAACGGTAACAGCGGGG 762
.|| ||| ||| ||| ||...|| || |.||.||.
BPUM_3433___s 736 TATGAGA-------GAGGGCACC--GATTTAT------GT--CGGCCGGA 768
BSNT_05796___ 763 ACGCAGCTCCACAATGTAAGGGCGATCCGCCTTT---ATGAACGAA---- 805
||.|||.|.||.||...|| |||||.|| .||.|||||
BPUM_3433___s 769 ACTCAGATGCATAACACAA-------CCGCCATTCAGCTGTACGAAAAGC 811
BSNT_05796___ 806 TGGGCTTCACCGCTGAACAA-----TCGTATTACTATTATCATATTTGGC 850
|||||||.| |||||| ||.|.||..|||||.|||.|.||||
BPUM_3433___s 812 TGGGCTTTA-----GAACAAAAAATTCTTTTTTGTATTACCATGTATGGC 856
BSNT_05796___ 851 CGGGCAAGGAGGCGAAA--TAA 870
| |.||..|||.||.| |||
BPUM_3433___s 857 C--GAAAAAAGGAGAGAGGTAA 876
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