Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05793 and BPUM_3431
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:22
# Commandline: needle
# -asequence dna-align/BSNT_05793___spsF.1.24716.seq
# -bsequence dna-align/BPUM_3431___spsF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05793___spsF-BPUM_3431___spsF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05793___spsF-BPUM_3431___spsF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05793___spsF
# 2: BPUM_3431___spsF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 828
# Identity: 473/828 (57.1%)
# Similarity: 473/828 (57.1%)
# Gaps: 192/828 (23.2%)
# Score: 1106.0
#
#
#=======================================
BSNT_05793___ 1 ---ATGAATGATATTCTCTTTATCATTCAAGCAAGAATGGGTTCAACAAG 47
||.||||||.|.||||||.||||.||.||.||||||||.||||||||
BPUM_3431___s 1 ATGATCAATGATGTGCTCTTTGTCATACAGGCTAGAATGGGCTCAACAAG 50
BSNT_05793___ 48 GCTTCCGGGAAAAGTGCTTCGGCCGCTCGGATCGAAT--CGTTTACTTGA 95
.||.||...|||.|||.|...||||.|||| |.|.|| |.||.| |.||
BPUM_3431___s 51 ACTGCCAAAAAAGGTGATGAAGCCGATCGG-TGGTATGGCATTGA-TCGA 98
BSNT_05793___ 96 TATTCTCGTTCACCGTGTCCGGCAAAGC-----GCGTTTTAC-----CAA 135
|.||.|||||.|.|| ||.||||| |....|||| |||
BPUM_3431___s 99 TTTTATCGTTGAACG-----GGTAAAGCAATCAGACCATTACAATCACAA 143
BSNT_05793___ 136 AAGGATCGGGATAATCTTGTCATCGCCAC----GTCTGACAAAGAAACTG 181
|| .|.|.||.||..|.|||||||| ||| ||...|||| |
BPUM_3431___s 144 AA-----CGCAAAACCTCATGATCGCCACAACAGTC-GAAGCAGAA---G 184
BSNT_05793___ 182 ACGACATATTAGAGGCGCA-----CTGTATCAAACAAGGCTTTCGTGTTT 226
|.||..|||| |||.|| .|.|||||| |.||||.|...||.|
BPUM_3431___s 185 ATGATCTATT---GGCTCATTATTGTTTATCAA--AGGGCTATAAGGTAT 229
BSNT_05793___ 227 TCCGCGGGAGCGAAGAACG-TGTCCTCGATAGGTTTGTGAAGGTCATAG- 274
|.||.||.||.| |||..| |||..|..|..|.||.|..||| ||||
BPUM_3431___s 230 TTCGTGGCAGTG-AGATGGATGTATTGCAGCGCTTCGCAAAG---ATAGC 275
BSNT_05793___ 275 --AAGCTGTTAAACCGTCAGTCATCATCCGGTTAACGGGTGATAATCCGT 322
||..|.||.||||...|.||||..|.||.||||||||.||||||||.|
BPUM_3431___s 276 TCAACATTTTGAACCACAAATCATTGTACGTTTAACGGGAGATAATCCAT 325
BSNT_05793___ 323 TTGTCGATCCGGAGC---TGCTCGATGTAATGATTAAGGCGCAT--TTTG 367
||.|.|||||.|||| || |||| .||||.||.|.|..||| ...|
BPUM_3431___s 326 TTATAGATCCAGAGCTTTTG-TCGA--AAATGCTTGAAGAACATAAACAG 372
BSNT_05793___ 368 ATCAAGGATCGGATTATACGTATA--TCCTGAATGCCCCATTAGGGATTT 415
|..|||| ||||.||.||||||| .||.||| |.|||.|.||.||||
BPUM_3431___s 373 AAGAAGG--CGGACTACACGTATACGACCGGAA--CACCACTCGGTATTT 418
BSNT_05793___ 416 GCGGCGAAGTGGTCAACGCCAACCTGTTAATTGACATCAGCCGTATTCAG 465
.|||.|||.||.|||||| |||| ||.||.||.| |
BPUM_3431___s 419 CCGGGGAAATGATCAACG-CAAC----TATTTTACGT------------G 451
BSNT_05793___ 466 AATATGGAGGATCAAT--------------ATCAG-----GAGCATGTCA 496
|| ||.|| |||| |.||| ||||||||||
BPUM_3431___s 452 AA-ATCGA----CAATTTTCCCCTTACGCAACCAGAGCGTGAGCATGTCA 496
BSNT_05793___ 497 CGTTATATATAAGGAATCATCC--AGCTCTTT-ATCGTGTTCAGTT-TTT 542
||.|.|||||..|.||.||.|| |||..||| |.| |.||.|| ||.
BPUM_3431___s 497 CGCTGTATATCCGAAAGCACCCTGAGCAATTTCAAC---TGCAATTATTC 543
BSNT_05793___ 543 AGAGGCGCCGGAACGATTTCGCGCCCCTCAATATCGGCTG---------- 582
|.| .|||| .||.||..|||| ||||| |||
BPUM_3431___s 544 ACA-CCGCC-CAAAGAACTCGC--------ATATC--CTGCTTATCGATT 581
BSNT_05793___ 583 -ACCATTGATACAAAGGAAGACTATGAAT---CGATAAAGGCCC-TCTA- 626
||.|||||||||.|.|||||.||.|.|| |.| ||| |.||
BPUM_3431___s 582 CACGATTGATACAGAAGAAGATTACGTATTTGCCA------CCCGTTTAC 625
BSNT_05793___ 627 -TCAAAAAGCAGGCGAGCGCCCCGATGT-ATCC---GCCT----CAGAGC 667
|.|||||||.||.| |.|.| ||.| |||| |.||.|
BPUM_3431___s 626 TTGAAAAAGCCGGTG--------GGTCTAATGCGGTGCCTACAGCTGAAC 667
BSNT_05793___ 668 TTATCACC-CTTCTGAACCGGAACCCCGATGCGG-----------CAA-- 703
|.|||||| .||.|||||.|| |.||.|||..|| |||
BPUM_3431___s 668 TCATCACCATTTGTGAACAGG-ATCCTGATATGGTTCGGTTGAATCAATT 716
BSNT_05793___ 704 -------CCGAACGAGAGGCTGACTAG- 723
|.||| .||.|||||.| |
BPUM_3431___s 717 TGTGAAGCAGAA--GGATGCTGAAT-GA 741
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