Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05789 and BPUM_3427
See
Amino acid alignment /
Visit
BSNT_05789 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:22
# Commandline: needle
# -asequence dna-align/BSNT_05789___spsK.1.24716.seq
# -bsequence dna-align/BPUM_3427___spsK.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05789___spsK-BPUM_3427___spsK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05789___spsK-BPUM_3427___spsK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05789___spsK
# 2: BPUM_3427___spsK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 910
# Identity: 580/910 (63.7%)
# Similarity: 580/910 (63.7%)
# Gaps: 113/910 (12.4%)
# Score: 1616.0
#
#
#=======================================
BSNT_05789___ 1 TTGACAAAGGTATTGGTGACTGGGGCGGGAGGACAGCTTGGCTTGGAACT 50
|..||.||.||..|.||.||.||.||.||.||.||.||....|||.|
BPUM_3427___s 1 ---ATGAAAGTTTTAATCACCGGTGCAGGCGGGCAACTAGGGAAAGAATT 47
BSNT_05789___ 51 ATGCCGCCAGCTGAAGCAAGCCGGATATGA-GGTCATTGCGTTAACAAAG 99
..||.|.|||||.||| .||...||.||.| .||||||||.|||||.|.|
BPUM_3427___s 48 GAGCAGACAGCTCAAG-GAGAAAGACATCACCGTCATTGCCTTAACGAGG 96
BSNT_05789___ 100 AAGATGATGAACATTGCTGACCAGCGCTCAGTACGGCATTCGTTTGGCCA 149
|..|||.|.||.||.||.|||||||...||||..|.||..|..|..|.||
BPUM_3427___s 97 AGCATGCTCAATATCGCAGACCAGCAAGCAGTCAGACACGCAATGAGACA 146
BSNT_05789___ 150 TTATCAGCCGGATATCGTGGTCAATAGC-GCCGCGTTTACGTCGGTTGAT 198
||.||..||..||||.||.||||.| || ||.||.|.|||.||.||.|||
BPUM_3427___s 147 TTTTCGACCTCATATTGTTGTCAGT-GCAGCAGCATATACCTCTGTAGAT 195
BSNT_05789___ 199 CAATGCGAGAAAGAGCTTGATAAAGCGTA-CTTGGTTAACGGAATCGGCG 247
||.||.||.|.|||....||.||.||||| ||| |||||.||.||.||||
BPUM_3427___s 196 CAGTGTGAAACAGAAACGGAAAAGGCGTATCTT-GTTAATGGCATTGGCG 244
BSNT_05789___ 248 CTTATTATACAGCGCTTGAGTC----AACCCGCATCGGTGCTCAATATGT 293
|.||.||.||||||||.|||.| || |||.||.||| .||.|||
BPUM_3427___s 245 CCTACTACACAGCGCTGGAGGCTAAGAA----CATAGGGGCT-GATGTGT 289
BSNT_05789___ 294 T-CATATCAGCACGGACTATGTATTCAATGGGAAAGGA-ACCCAGCCATA 341
| |||.||||.||.||.|||||.||..|.|||.|||.| ||.| |||.||
BPUM_3427___s 290 TACATGTCAGTACAGATTATGTGTTTGACGGGCAAGCAGACAC-GCCTTA 338
BSNT_05789___ 342 TAGGGAAGACGATCCCC---TCGATCCGAAAACCATTTATGGCAAAAGCA 388
.| |||.||||.|.| ..|||||..|||||||||||||.|||||.|
BPUM_3427___s 339 CA---AAGTCGATGCACAAGCAGATCCTCAAACCATTTATGGAAAAAGTA 385
BSNT_05789___ 389 AAAGGCTTGGAGAAGAACTGATAAGATTA-----------ACGA--CAAA 425
|||.||||||.||.|||.|||| |.| |||| .|||
BPUM_3427___s 386 AAAAGCTTGGTGAGGAATTGAT----TCATCTTGTATCAGACGAAGTAAA 431
BSNT_05789___ 426 AGACAGCACGATCATCAGAACATCGTGGGTGTACGGACATG-GCGGCAGT 474
| ||||||.|.|||||||||.|.|||||||||| |.|.|| |
BPUM_3427___s 432 A---------ATCATCCGTACATCGTGGCTATACGGACATGAGGGACA-T 471
BSNT_05789___ 475 AATTTCGTTGAA-ACCATGCTGAAGTTTGCTGAAACGAAA----CAA--G 517
|||||.| |||| |||||.||...|.|.||.||||| ||| ||| |
BPUM_3427___s 472 AATTTTG-TGAATACCATCCTTCGGCTCGCAGAAAC-AAAGGATCAATTG 519
BSNT_05789___ 518 AGCTTCGGGTTGTCAGCGATCAAATTGGTTCGCCGACTTATACGAAGGAT 567
.||.|| ||.|.|||.|||||.||.||.||.||||||||.||||||
BPUM_3427___s 520 CGCATC-----GTGAACGACCAAATAGGCTCACCTACTTATACAAAGGAT 564
BSNT_05789___ 568 TTAGCAGAAGCGGTCATCAAGCTGTT-------CAGCCATCCGCCGGGCA 610
.|.|||||.||..||||..|..|||| |||.|| ||.|
BPUM_3427___s 565 GTCGCAGAGGCCATCATTCATTTGTTTGATCAACAGGCA-------GGAA 607
BSNT_05789___ 611 TCTATCATGTCAGCAATTCAGGCATATGCAG---CTGGTATGAGTTTGCG 657
|.|||||||||||.|| |||..|.| ||.| |||||.|||.||||||
BPUM_3427___s 608 TTTATCATGTCAGTAA--CAGAGAGA-GCTGTTCCTGGTTTGACTTTGCG 654
BSNT_05789___ 658 ATGGCAATTATGGAAGAAAGCGGGCTGGAAACAGCCATTTTGCCTGTAAC 707
...|.||||.|||.|.|||||||.|||...||..|||||..|||..|..|
BPUM_3427___s 655 TCAGAAATTGTGGCAAAAAGCGGCCTGTCTACGACCATTGAGCCCATTTC 704
BSNT_05789___ 708 GACAGAGGAATACGGGAACAAAACGCCCCGTCCGGCATACTCTGTGCTGA 757
.||.||.||.||.||...|.|||||||.||.||.||.||.||||| .|.|
BPUM_3427___s 705 CACGGAAGAGTATGGATTCCAAACGCCTCGCCCAGCCTATTCTGT-ATTA 753
BSNT_05789___ 758 G-CCATCGGGCCATTGAAG----AAGCCGGCATCCGCCCCCGCCACTGGC 802
| ||.||..||.||||||| |.|..||||.||| .|.||.|||.
BPUM_3427___s 754 GACCTTCAAGCGATTGAAGCTACAGGTTGGCAGCCG----AGACATTGGA 799
BSNT_05789___ 803 GGGAAGCGTTACGAGAGTATTTGCAG---GAAAGGAG-------CAGTAC 842
.|||.|||.|.|..||.||||||||| |||.|||| |||.|
BPUM_3427___s 800 AGGATGCGCTTCATGAATATTTGCAGAAAGAAGGGAGATGGCATCAGCA- 848
BSNT_05789___ 843 GTGTGATTGA 852
|||||||
BPUM_3427___s 849 ---TGATTGA 855
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.