Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05767 and BPUM_3425

See Amino acid alignment / Visit BSNT_05767 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:20
# Commandline: needle
#    -asequence dna-align/BSNT_05767___ywfH.1.24716.seq
#    -bsequence dna-align/BPUM_3425___ywfH.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05767___ywfH-BPUM_3425___ywfH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05767___ywfH-BPUM_3425___ywfH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05767___ywfH
# 2: BPUM_3425___ywfH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 888
# Identity:     530/888 (59.7%)
# Similarity:   530/888 (59.7%)
# Gaps:         159/888 (17.9%)
# Score: 1439.0
# 
#
#=======================================

BSNT_05767___      0 --------------------------------------------------      0
                                                                       
BPUM_3425___y      1 GTGTCATTTTATGTATTTTATAAGTTAAGCAGAAAAGGGATGTGGATAAG     50

BSNT_05767___      1 -TTGTCAAAACGAACCGCATTTGTTATGGGAGCCAGTCAAGGGATTGGGA     49
                      |||||.|||.|||..||||||||.|..||.||.|||..|||||||||.|
BPUM_3425___y     51 TTTGTCTAAAAGAATTGCATTTGTAACAGGGGCAAGTACAGGGATTGGAA    100

BSNT_05767___     50 AAGCAATCGCTCTGAAATTAGCAGACCAGCACTTTTC---CCTCGTCATT     96
                     |.||||||||..|.||..|.||.|.||||.||..|.|   ..||.||||.
BPUM_3425___y    101 AGGCAATCGCCATAAAGCTTGCCGCCCAGGACCATACAAAGGTCATCATC    150

BSNT_05767___     97 AATTCGCGAAAT----------TTG--GATA---------ATATTGAA--    123
                     |||||..|||||          |.|  ||||         |.||||||  
BPUM_3425___y    151 AATTCTAGAAATCAACCCTCACTAGAAGATACGCGGCAGCACATTGAACG    200

BSNT_05767___    124 TCTGTCAAAGAAGACATTTTTGCCAAGCATCCTGAGGCGAGCGTCATTGT    173
                     |.||.|  |||| |||        |||      |||.|| |.|||    |
BPUM_3425___y    201 TATGGC--AGAA-ACA--------AAG------GAGCCG-GTGTC----T    228

BSNT_05767___    174 CCTTGC--GGGGGATATGTC---TGACCGGCATACGAG----AGCGGGCA    214
                     |.||.|  .||.||||||||   ||| .||.||.||||    |||     
BPUM_3425___y    229 CTTTTCTGTGGCGATATGTCACATGA-AGGAATGCGAGCTGAAGC-----    272

BSNT_05767___    215 TTTTTCAGGAAATCGAATCTCAA---TGCGGACGGCTTGATGTTCTGATT    261
                     .|||.|| |.|||.||   |.||   |..||..|.||.|||||..|||||
BPUM_3425___y    273 CTTTGCA-GCAATAGA---TAAAGAGTTTGGTAGACTGGATGTGTTGATT    318

BSNT_05767___    262 AATAATATCCCGGGCGGCGCGCCTGATACATTTGATAACTGCAATATAGA    311
                     |||||.||.||.||.||...|||.|||||.||||||...||..|.|..||
BPUM_3425___y    319 AATAACATTCCAGGAGGGAAGCCAGATACTTTTGATTCATGTGAAAGCGA    368

BSNT_05767___    312 CGATATGACGGCCACGTTCACTCA-AAAGACCGTTGCCTATATTGACGCT    360
                     ..|.|||..|||....||..|||| |||| |..||||.||.|||||....
BPUM_3425___y    369 GCAGATGCTGGCAGTATTTTCTCAGAAAG-CTCTTGCGTACATTGATATG    417

BSNT_05767___    361 ATCAAGCGTGCTTC-CTCACTGATGAAACAAAACGAGTTTGGCAGAATCA    409
                     ||.||.||.||..| .|.| ||||||||..|.|.||.|.|||..|.||||
BPUM_3425___y    418 ATGAAACGCGCGGCAGTGA-TGATGAAAAGACATGAATATGGACGGATCA    466

BSNT_05767___    410 -TCAACATTGTCGGAAATCTGTGGAAAGAACCCGG-CGCCAACATGTTCA    457
                      |||| |||||.||.||.||.|||||.|||||.|| |..||| |||||.|
BPUM_3425___y    467 TTCAA-ATTGTTGGGAACCTTTGGAAGGAACCTGGTCATCAA-ATGTTTA    514

BSNT_05767___    458 CAAACAGTATGATGAATGCCGCTTTAATTAACGCCAGTAAAAATATTTCC    507
                     |.|||||||||||||||||.||..|.||.||.||.|||||||||....||
BPUM_3425___y    515 CGAACAGTATGATGAATGCAGCCATCATCAATGCTAGTAAAAATGCAGCC    564

BSNT_05767___    508 ATC-CAGCTTGCTCC--------TCACAACATTACTGTCAACTGTCTGAA    548
                      || ||||||||.||        |||||        ||.||.|||.|.||
BPUM_3425___y    565 -TCGCAGCTTGCACCTTCAGGGATCACA--------GTGAATTGTTTAAA    605

BSNT_05767___    549 TCCTGGTTTTATCGCTACAGACCGTTATCATCAATTTGTGGAAAATGTGA    598
                     .||.||.|||||.||||||||.||.|||.|.||||||.|.|||||..|||
BPUM_3425___y    606 CCCGGGATTTATTGCTACAGATCGGTATGAACAATTTATCGAAAACATGA    655

BSNT_05767___    599 TGAAAAAGAACAG-CA-TATCCAAACAGAAAGCAGAGGAACAG---GTCG    643
                     ||  ...|..||| || ||||   ||...|||.||..|.||||   ||.|
BPUM_3425___y    656 TG--CGTGCGCAGTCATTATC---ACGCGAAGAAGCTGTACAGGCTGTTG    700

BSNT_05767___    644 CTTCCGGGATTCCGATGAAACGGGTCGGATCAGCCGA-AGAAACCGCAGC    692
                     |.||.||.||.||.|||.||.|.||.||.|||| ||| .||||..||..|
BPUM_3425___y    701 CGTCAGGAATCCCCATGCAAAGAGTAGGTTCAG-CGAGTGAAATGGCTTC    749

BSNT_05767___    693 GCTCGCCGCGTTTCTTGCCTCTGAGGAAGCCTCCTACATCACGGGACAGC    742
                     ..|.||.||.|||.||||.||.|||||||||||.||..||||.|||||.|
BPUM_3425___y    750 ATTGGCGGCATTTATTGCATCAGAGGAAGCCTCTTATGTCACTGGACAAC    799

BSNT_05767___    743 AAATTTCCGCTGACGGCGGCAGCATGAAAAGCATATAA    780
                     ||||.||.|..||.||.||....||||||||.||||||
BPUM_3425___y    800 AAATATCTGTCGATGGTGGTTCGATGAAAAGTATATAA    837


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05767 and BPUM_3425

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
