Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05771 and BPUM_3423

See Amino acid alignment / Visit BSNT_05771 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:20
# Commandline: needle
#    -asequence dna-align/BSNT_05771___ywfE.1.24716.seq
#    -bsequence dna-align/BPUM_3423___bacD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05771___ywfE-BPUM_3423___bacD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05771___ywfE-BPUM_3423___bacD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05771___ywfE
# 2: BPUM_3423___bacD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1516
# Identity:    1007/1516 (66.4%)
# Similarity:  1007/1516 (66.4%)
# Gaps:         191/1516 (12.6%)
# Score: 3088.5
# 
#
#=======================================

BSNT_05771___      1 ATGGAG-AGAAAAACAGTATTGGTCATCGCTGATCTTGGAGGCTGCCCGC     49
                      |.||| |.||||||.|||.|.|||||.||||||||.|||||.|||||||
BPUM_3423___b      1 -TTGAGTAAAAAAACCGTACTTGTCATTGCTGATCTGGGAGGATGCCCGC     49

BSNT_05771___     50 CGCACATGTTTTATAAAAGCGCTGCTGAAAAATATAACCTGGTCAGCTT-     98
                     |.||.|||||||||.||||||..||||.|...|||.|..|.|| ..||| 
BPUM_3423___b     50 CCCATATGTTTTATGAAAGCGTGGCTGCATCGTATCATATCGT-TTCTTA     98

BSNT_05771___     99 TATTCCAAGACCTTTTGCAATTACA----GCCTCCCATGCAGCATTGATT    144
                     |||.||.|||||.|||||.||||||    |.|.|.| || |||  |.||.
BPUM_3423___b     99 TATCCCGAGACCCTTTGCTATTACAAAGGGACACGC-TG-AGC--TAATC    144

BSNT_05771___    145 GAAAAATACTCGGTCGCGGTCATAAAAGATAAAGACTATTTTAAGAGTTT    194
                     |||||||||||..|.||||||||.||||||...||.||||||.|     |
BPUM_3423___b    145 GAAAAATACTCTATTGCGGTCATCAAAGATCGGGATTATTTTGA-----T    189

BSNT_05771___    195 A-----GCTGATTTTGAGCATCCTGATTCCATTTATTGGGCGCATGAGGA    239
                     |     .||..||||||.||.||||||||.|||||||||||.|||||.||
BPUM_3423___b    190 ACAAATCCTTCTTTTGAACACCCTGATTCGATTTATTGGGCACATGATGA    239

BSNT_05771___    240 TCATAACAAGCCTGAGGAAGAGGTCGTCGAGCAAATCGTCAAGGT--TGC    287
                     |.||...||..|.|||||||||||.|||||..|..||||     |  ||.
BPUM_3423___b    240 TTATCTGAAATCAGAGGAAGAGGTGGTCGATGACCTCGT-----TCGTGT    284

BSNT_05771___    288 CG-----------AAATGTTTGGGGCGGATGCCATCACAACAAACAATGA    326
                     ||           |||        ||.|||||.||.||.||.||.|||||
BPUM_3423___b    285 CGCTTCCTTTTTCAAA--------GCAGATGCGATTACCACCAATAATGA    326

BSNT_05771___    327 ATTATTCATTGCTCCGATGGCGAAAGCCTG-TGAACGTCTGGGCCTGAGA    375
                     ||||||||||||.||.|||||.|||| ||| .||.||.||.||.|||.|.
BPUM_3423___b    327 ATTATTCATTGCACCAATGGCAAAAG-CTGCAGAGCGACTTGGGCTGCGC    375

BSNT_05771___    376 GGTGCCGGCGTGCAGGCAGCCGAAAATGCCAGAGATAAAAATAAAATGAG    425
                     ||.|||||.||..|||||||.|||...||..|.|||||||...|||||||
BPUM_3423___b    376 GGCGCCGGGGTAAAGGCAGCTGAATTAGCGCGTGATAAAAGCCAAATGAG    425

BSNT_05771___    426 GGACGCTTTTAATAAGGCCGGAGTCAAATCGATCAAAAACAAACGAGTCA    475
                     ||..||.||.||..||||.||.||||||.|..|.||||..||.|..||||
BPUM_3423___b    426 GGCTGCATTCAACGAGGCTGGGGTCAAAGCAGTGAAAACTAAGCCTGTCA    475

BSNT_05771___    476 CAACTCTTGAAGATTTCCGTGC-TGCTCTTGAAGAGATCGGCACACCTCT    524
                     |||||.|.|..|||||.| .|| .||..||||..|.|||||.|||||.||
BPUM_3423___b    476 CAACTTTAGCTGATTTTC-AGCAAGCCATTGAGCATATCGGGACACCGCT    524

BSNT_05771___    525 TATCTTAAAGCCTACATACTTAGCGAGTTCAATCGGTGTAACGCTGATTA    574
                     |||.||||||||||||||.|||||.||.||.||.||.||.||.||..|| 
BPUM_3423___b    525 TATTTTAAAGCCTACATATTTAGCAAGCTCCATTGGCGTGACCCTTTTT-    573

BSNT_05771___    575 CGGACACTGA----GACGGCAGAAGATG----AATTTAACAGAGT-CAAT    615
                         || |||    |.|||||| .||||    ..|||.|| |.|| ||||
BPUM_3423___b    574 ----CA-TGATCGTGCCGGCAG-TGATGGTCTCTTTTTAC-GCGTACAAT    616

BSNT_05771___    616 GACTATCTGAAATCAATTAACGTGCCAAAGGCGGTTACGTTTGAAGCGCC    665
                      .||||.||.||.|.||...|||.|||||.||.||.||||.||||||.|.
BPUM_3423___b    617 -CCTATTTGCAAACCATCCCCGTTCCAAACGCTGTGACGTATGAAGCACG    665

BSNT_05771___    666 GTTTATCGCTGAAGAATTTTTACAGGGTGAGTACGGAGACTGGTATCAA-    714
                     ||||.||||||||...|..|||.|||||...||||..||.||||||||| 
BPUM_3423___b    666 GTTTGTCGCTGAAACGTACTTAGAGGGTTCTTACGAGGATTGGTATCAAG    715

BSNT_05771___    715 ACAGAAGGGTACTCCGACTATATCAGTATAGAAGGCATCA-TGGCTGACG    763
                     || ||.||.||.||.||.|||.|||||.||||||| ||.| |.|.|||.|
BPUM_3423___b    716 AC-GACGGCTATTCTGATTATGTCAGTGTAGAAGG-ATTAGTTGTTGAGG    763

BSNT_05771___    764 GTGAGTATTTCCCGATCGCCATTCATGATAAAACGCCGCAAATCGGGTTT    813
                     |.||.|||.||||..|.|.||||||||||||.||.||.|||.||||.||.
BPUM_3423___b    764 GAGAATATATCCCATTTGTCATTCATGATAAGACCCCTCAAGTCGGATTC    813

BSNT_05771___    814 ACAGAGACATCCCACATTACGCCGTCCATTCTGG---ATGAAGAGGCAAA    860
                     |||||.|||.|.||.||.||.|||||.||.||.|   ||||||.|     
BPUM_3423___b    814 ACAGAAACAGCTCATATCACTCCGTCGATCCTAGACAATGAAGCG-----    858

BSNT_05771___    861 AAAGAA---AATTGTCGAAGCTGCCAAAAAGGCAAATGAAGGGCTTGGCC    907
                      .||.|   .||..|.||.||.||.|||||.||||||||.|||.|.||.|
BPUM_3423___b    859 -CAGCACCTCATCATTGAGGCAGCAAAAAAAGCAAATGAGGGGTTAGGAC    907

BSNT_05771___    908 TGCAAAATTGCGCAACACATACAGAGATCAAGCTAATGAAAAACAGAGA-    956
                     |..||||.|||||.||.|||||||||||||||||.||||||||.||.|| 
BPUM_3423___b    908 TTGAAAACTGCGCCACTCATACAGAGATCAAGCTTATGAAAAATAGGGAT    957

BSNT_05771___    957 ACCGGGTTTAATAGAGTCGGCAGCCAGATTCGCAGGCTGGAATATGATTC   1006
                     ||| ||.|||||.||.||.|||||.|||||.||.||||||||||||||||
BPUM_3423___b    958 ACC-GGATTAATTGAATCAGCAGCTAGATTTGCTGGCTGGAATATGATTC   1006

BSNT_05771___   1007 CTAATATTAAAAAGGTCTTTGGCCTTGATATGGCGCAA------------   1044
                     |.|||||.|||||.||||||||..|.|||||||| |||            
BPUM_3423___b   1007 CGAATATCAAAAAAGTCTTTGGGGTCGATATGGC-CAAGCTGCTCATTGA   1055

BSNT_05771___   1045 -TTATTATTAGATGTCCTCTGTTTCGGAAAAGACGCCGATCTGCC----G   1089
                      .|||||.|.|||            ||||||.|.||.|||.||||    |
BPUM_3423___b   1056 TGTATTAGTCGAT------------GGAAAAAAAGCTGATTTGCCAAAAG   1093

BSNT_05771___   1090 GACGGATTATTGGATCAAGAGCCTTATTATGTTGCCGACTGCCATTTGTA   1139
                     .||...||..||| |||...||   |||||.|.||.||.||.|||||.||
BPUM_3423___b   1094 AACTACTTTCTGG-TCATACGC---ATTATATAGCAGATTGTCATTTATA   1139

BSNT_05771___   1140 CCCGCAGCATTTCAAACAAAATGGCCAGATTCCAGAAACCG-CTGAGG--   1186
                     |||.||||||||||||.|.|..||.||.|||       ||| ||||||  
BPUM_3423___b   1140 CCCTCAGCATTTCAAAGAGAGCGGACACATT-------CCGCCTGAGGTC   1182

BSNT_05771___   1187 ------AT-----TTGGTCAT-TGAAGCGATCGATATTCCGGACGGGC-T   1223
                           ||     |||.|||| ||        .||||||||.| ||.| .
BPUM_3423___b   1183 ACACACATCACCATTGATCATGTG--------TATATTCCGCA-GGACAC   1223

BSNT_05771___   1224 TTTAAAAGGGGATACTGAAATCGTTTCATTTTCAG-----CCGCAGCACC   1268
                     ||||...||.|||||||        ||||..||||     ||||..||||
BPUM_3423___b   1224 TTTAGTTGGAGATACTG--------TCATCATCAGTGAATCCGCTCCACC   1265

BSNT_05771___   1269 ---AGGCACTTCAGTTGATTTGACATTGTTTGAAGCTTTCAATTCCATTG   1315
                        |||.||.|..||.||||||.|.||.||||||||.||.|||..|||.|
BPUM_3423___b   1266 TAAAGGAACCTTTGTCGATTTGTCTTTATTTGAAGCCTTTAATGGCATCG   1315

BSNT_05771___   1316 CTG-CATTTGAACTGAAAGGCAGT--AATTCACAGGATGTGGCTGAATCA   1362
                      || |..|||||.|.|||||  ||  ..|||.||||||||.||.|..||.
BPUM_3423___b   1316 -TGTCTCTTGAATTAAAAGG--GTCGTCTTCTCAGGATGTTGCCGCCTCC   1362

BSNT_05771___   1363 ATCAGACAA-ATTCAGCAGCATGCA------AAGCTGACGGCAAAGTAT-   1404
                     |||.| ||| |||||..||||.|||      .||.|.|.||  |.|.|| 
BPUM_3423___b   1363 ATCCG-CAACATTCAAAAGCAGGCATCCATTCAGTTAATGG--ATGAATT   1409

BSNT_05771___   1405 -GTGCTGCCAGTATGA   1419
                      |||..|   |.||.|
BPUM_3423___b   1410 AGTGAAG---GGATAA   1422


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