Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05773 and BPUM_3422

See Amino acid alignment / Visit BSNT_05773 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:20
# Commandline: needle
#    -asequence dna-align/BSNT_05773___ywfD.1.24716.seq
#    -bsequence dna-align/BPUM_3422___bacC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05773___ywfD-BPUM_3422___bacC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05773___ywfD-BPUM_3422___bacC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05773___ywfD
# 2: BPUM_3422___bacC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 821
# Identity:     536/821 (65.3%)
# Similarity:   536/821 (65.3%)
# Gaps:         112/821 (13.6%)
# Score: 1652.0
# 
#
#=======================================

BSNT_05773___      1 ATGATCATGAACCTCACCGATAAAACCGTCCTCATCACAGGAGGCGCATC     50
                           ||||||||..|||..|||..||||.|.||.||||||||.|||||
BPUM_3422___b      1 ------ATGAACCTTGCCGGAAAAGTCGTCTTGATTACAGGAGGTGCATC     44

BSNT_05773___     51 AGGCATTGGTTATGCTGCGGTTCAGGCTTTT--TTGGGCCAGCAGGCCAA     98
                     .||.|||||...|||.||.| |||.||||||  |||.||..|.||  |||
BPUM_3422___b     45 GGGGATTGGGCTTGCCGCAG-TCAAGCTTTTCCTTGAGCACGGAG--CAA     91

BSNT_05773___     99 T-GTGGTTGTGGCGGATATTGATGAAGCGCAAGGAGAAGCAATGGTACGA    147
                     | ||.|..|||||.||.||..|||||        |.||||       .|.
BPUM_3422___b     92 TAGTCGCAGTGGCCGACATCAATGAA--------AAAAGC-------GGC    126

BSNT_05773___    148 AAAGAA-------AATAATGACAGGCTGCAC------------TTTGTGC    178
                     |||.||       |||.||.|    |.||||            |||.|..
BPUM_3422___b    127 AAACAACTCGTTGAATCATTA----CCGCACGAGCATCTTGCGTTTTTCA    172

BSNT_05773___    179 AAACGGACATCACAGACGAAGCTGCCTGCCAGCA---CG--CAGT-----    218
                     ||||.||.||.||..|.|||.|||.|||.||..|   ||  ||||     
BPUM_3422___b    173 AAACAGATATTACGAATGAATCTGACTGTCAAAAAACCGTTCAGTCTGTG    222

BSNT_05773___    219 -TGAATCGGCGGTTCATACATTTGGCGGGCTCGATGTCTTGATTAATAAT    267
                      ||||.|.|           |||||.....|||||||..|||||||.|||
BPUM_3422___b    223 CTGAACCAG-----------TTTGGAACAATCGATGTACTGATTAACAAT    261

BSNT_05773___    268 GCAGGCATCGAAATCGTGGCGCCTATTCACGAGATGGAGCTCAG-CGATT    316
                     ||||||||.||||||||..|||||.|||||||||||..||| || .||||
BPUM_3422___b    262 GCAGGCATTGAAATCGTCTCGCCTGTTCACGAGATGACGCT-AGAGGATT    310

BSNT_05773___    317 GGAA-CAAGGTGCTGCAAGTCAATTTGACCGGCATGTTTTTAATGAGCAA    365
                     |||| ||...|| ||||.|||||..||||.||..|.|||.|.|||||.||
BPUM_3422___b    311 GGAATCACATTG-TGCAGGTCAACCTGACGGGTGTCTTTCTCATGAGTAA    359

BSNT_05773___    366 ACATGCACT----CAAGCATATGCTGGCCGCCGGCAAG------GGCAAC    405
                     .|||  |||    ||  ||||||||      .|..|||      ||.|..
BPUM_3422___b    360 GCAT--ACTTTGCCA--CATATGCT------TGAAAAGAAAAGCGGAAGT    399

BSNT_05773___    406 ATCATTAATACGTGCTCTGTCGGCGGACTCGT-GGCATGGCCTGATATTC    454
                     |||||.|||||..|.||||||||.||.||.|| ||| ||||||||.||.|
BPUM_3422___b    400 ATCATCAATACTGGATCTGTCGGAGGTCTTGTCGGC-TGGCCTGACATCC    448

BSNT_05773___    455 CTGCTTATAACGCCAGCAAA-GGCGGGGTTTTGCAGCTGACTAAATCAAT    503
                     ||||.||||||| ||.|||| |||||.||..|.|||.||||.|||||.||
BPUM_3422___b    449 CTGCCTATAACG-CAACAAAGGGCGGTGTCATCCAGTTGACCAAATCGAT    497

BSNT_05773___    504 GGCCGTTGATTATGCGAAACATCAAATTCGGGTGAACTGCGTAT-GC-CC    551
                     |||.||.||.|||||....||||||||..|||||||||  |||| || ||
BPUM_3422___b    498 GGCGGTCGACTATGCCGCCCATCAAATCAGGGTGAACT--GTATCGCTCC    545

BSNT_05773___    552 GGGGATCATCGACACACCGCTGAATGAAAAATCATTCCTTGAAAATAATG    601
                     .||.||.||.||.||.||..|.|||||||||||.||..|.||.|||.||.
BPUM_3422___b    546 AGGTATTATTGATACGCCATTAAATGAAAAATCCTTTGTAGATAATCATT    595

BSNT_05773___    602 AAGGCACACTTGAAGAGATTAAAAAAGAAAAGGCGAAGGTAAATCCGCTG    651
                     .||..|..|||||.|...||||.||.|||||.||.|||||.|||||..|.
BPUM_3422___b    596 CAGAAAGTCTTGAGGTTGTTAAGAAGGAAAAAGCAAAGGTGAATCCATTA    645

BSNT_05773___    652 CTGAGGCTTGGGAAACCTGAAGAAATCGCAAACGTGATGCTGTTTTTAGC    701
                     |...|.||.||.|||||.||||||||.||...|||.|||||||||.|.||
BPUM_3422___b    646 CGTCGTCTCGGAAAACCAGAAGAAATTGCGGGCGTCATGCTGTTTCTCGC    695

BSNT_05773___    702 CTCGGATTTATCAAGCTATATGACCGGAAGCGCCATCACCGCAGACGGAG    751
                     |||.|||.||||.|||||||||||.|||||.|...||||.|||||.||.|
BPUM_3422___b    696 CTCTGATCTATCCAGCTATATGACTGGAAGTGTTGTCACAGCAGATGGCG    745

BSNT_05773___    752 GATACACCGCACAATAG----    768
                     |.||||||||    |||    
BPUM_3422___b    746 GTTACACCGC----TAGATAA    762


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05773 and BPUM_3422

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
