Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05775 and BPUM_3420

See Amino acid alignment / Visit BSNT_05775 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:21
# Commandline: needle
#    -asequence dna-align/BSNT_05775.1.24716.seq
#    -bsequence dna-align/BPUM_3420___bacA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05775-BPUM_3420___bacA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05775-BPUM_3420___bacA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05775
# 2: BPUM_3420___bacA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 630
# Identity:     213/630 (33.8%)
# Similarity:   213/630 (33.8%)
# Gaps:         354/630 (56.2%)
# Score: 662.5
# 
#
#=======================================

BSNT_05775         0 --------------------------------------------------      0
                                                                       
BPUM_3420___b      1 ATGATCTTAAAGAATGATGTTTTTCATTTCAAAGAAGAGCCCATCGTTTC     50

BSNT_05775         0 --------------------------------------------------      0
                                                                       
BPUM_3420___b     51 ACCTAAGATGTTTACAGTCAATACACTAGGCCCTAAGGGGACAAGCAGTG    100

BSNT_05775         0 --------------------------------------------------      0
                                                                       
BPUM_3420___b    101 AATACGCAGCAAAACATTTCATCTCTCATTCCACCACTACACTCGGCACT    150

BSNT_05775         0 --------------------------------------------------      0
                                                                       
BPUM_3420___b    151 CAAACGAAACTATCCCTTTACGACTCGTTCGAAACTTGCATTGAACATAC    200

BSNT_05775         0 --------------------------------------------------      0
                                                                       
BPUM_3420___b    201 TCTCTCTCACGCACTCCAATACACTCTCGTTCCACACGCATACGAAGGAA    250

BSNT_05775         0 --------------------------------------------------      0
                                                                       
BPUM_3420___b    251 TCAAACACTTCTACATGAGACCTGACCTACAGCTTTTACAAATTTTCAGA    300

BSNT_05775         1 ------------ATGTACGGCCTGGCTGTTCGTCCTGATTTT-GAATTCA     37
                                 ||||||||..|||||||..|.||.|||||| .|.||||
BPUM_3420___b    301 TGTGACACACCCATGTACGGTTTGGCTGTCAGACCAGATTTTCCATTTCA    350

BSNT_05775        38 -GAGACGATATGCTTGATACATCTGTT----ATTGTTTCACATCCTTCAC     82
                      || || |.||||    |.||.|..||    |||||.||.||.|||.|||
BPUM_3420___b    351 TGA-AC-AAATGC----TCCACCATTTAAAAATTGTCTCTCACCCTGCAC    394

BSNT_05775        83 CTATTAATTTAATAAAATATTTTACCCGCAAAGATGTTCGTTTCAAACTA    132
                     ||.|.|||||.||..|||||||.|..|.|.||.|||.|...||..|.|||
BPUM_3420___b    395 CTGTCAATTTGATTCAATATTTCATTCACCAAAATGCTGAATTTGAGCTA    444

BSNT_05775       133 GTCAATTCAACCAGTCAAGCCGCAAGAAAAGTAAAAGAAGG----TTTGT    178
                     |||||||||||.|||...||||||..||||||||.|||.||    |||| 
BPUM_3420___b    445 GTCAATTCAACAAGTACTGCCGCACAAAAAGTAAGAGACGGCGAATTTG-    493

BSNT_05775       179 ATGACATT--GCCTTAACCAATGAGCTTGCAC---GGCAAAAGTACGGGC    223
                          |||  ||.||||||||||||.|.|| |   |.||.|  ||.||.|
BPUM_3420___b    494 -----ATTTCGCTTTAACCAATGAGGTAGC-CAGAGTCACA--TATGGCC    535

BSNT_05775       224 TAACCTTTGTAAAAACATTCAAAAGCATTCCAATGAGCTGGTCATTATTT    273
                     |.|||||.||...|||.||.||||||||.||.|||||||||||..||||.
BPUM_3420___b    536 TCACCTTCGTTCGAACGTTTAAAAGCATCCCTATGAGCTGGTCCATATTC    585

BSNT_05775       274 GGAAAAGGAGACGTTGATGATGAAAACTAA    303
                     |||||||||||    ||| ||.|       
BPUM_3420___b    586 GGAAAAGGAGA----GAT-ATAA-------    603


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