Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05775 and BPUM_3420
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:21
# Commandline: needle
# -asequence dna-align/BSNT_05775.1.24716.seq
# -bsequence dna-align/BPUM_3420___bacA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05775-BPUM_3420___bacA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05775-BPUM_3420___bacA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05775
# 2: BPUM_3420___bacA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 630
# Identity: 213/630 (33.8%)
# Similarity: 213/630 (33.8%)
# Gaps: 354/630 (56.2%)
# Score: 662.5
#
#
#=======================================
BSNT_05775 0 -------------------------------------------------- 0
BPUM_3420___b 1 ATGATCTTAAAGAATGATGTTTTTCATTTCAAAGAAGAGCCCATCGTTTC 50
BSNT_05775 0 -------------------------------------------------- 0
BPUM_3420___b 51 ACCTAAGATGTTTACAGTCAATACACTAGGCCCTAAGGGGACAAGCAGTG 100
BSNT_05775 0 -------------------------------------------------- 0
BPUM_3420___b 101 AATACGCAGCAAAACATTTCATCTCTCATTCCACCACTACACTCGGCACT 150
BSNT_05775 0 -------------------------------------------------- 0
BPUM_3420___b 151 CAAACGAAACTATCCCTTTACGACTCGTTCGAAACTTGCATTGAACATAC 200
BSNT_05775 0 -------------------------------------------------- 0
BPUM_3420___b 201 TCTCTCTCACGCACTCCAATACACTCTCGTTCCACACGCATACGAAGGAA 250
BSNT_05775 0 -------------------------------------------------- 0
BPUM_3420___b 251 TCAAACACTTCTACATGAGACCTGACCTACAGCTTTTACAAATTTTCAGA 300
BSNT_05775 1 ------------ATGTACGGCCTGGCTGTTCGTCCTGATTTT-GAATTCA 37
||||||||..|||||||..|.||.|||||| .|.||||
BPUM_3420___b 301 TGTGACACACCCATGTACGGTTTGGCTGTCAGACCAGATTTTCCATTTCA 350
BSNT_05775 38 -GAGACGATATGCTTGATACATCTGTT----ATTGTTTCACATCCTTCAC 82
|| || |.|||| |.||.|..|| |||||.||.||.|||.|||
BPUM_3420___b 351 TGA-AC-AAATGC----TCCACCATTTAAAAATTGTCTCTCACCCTGCAC 394
BSNT_05775 83 CTATTAATTTAATAAAATATTTTACCCGCAAAGATGTTCGTTTCAAACTA 132
||.|.|||||.||..|||||||.|..|.|.||.|||.|...||..|.|||
BPUM_3420___b 395 CTGTCAATTTGATTCAATATTTCATTCACCAAAATGCTGAATTTGAGCTA 444
BSNT_05775 133 GTCAATTCAACCAGTCAAGCCGCAAGAAAAGTAAAAGAAGG----TTTGT 178
|||||||||||.|||...||||||..||||||||.|||.|| ||||
BPUM_3420___b 445 GTCAATTCAACAAGTACTGCCGCACAAAAAGTAAGAGACGGCGAATTTG- 493
BSNT_05775 179 ATGACATT--GCCTTAACCAATGAGCTTGCAC---GGCAAAAGTACGGGC 223
||| ||.||||||||||||.|.|| | |.||.| ||.||.|
BPUM_3420___b 494 -----ATTTCGCTTTAACCAATGAGGTAGC-CAGAGTCACA--TATGGCC 535
BSNT_05775 224 TAACCTTTGTAAAAACATTCAAAAGCATTCCAATGAGCTGGTCATTATTT 273
|.|||||.||...|||.||.||||||||.||.|||||||||||..||||.
BPUM_3420___b 536 TCACCTTCGTTCGAACGTTTAAAAGCATCCCTATGAGCTGGTCCATATTC 585
BSNT_05775 274 GGAAAAGGAGACGTTGATGATGAAAACTAA 303
||||||||||| ||| ||.|
BPUM_3420___b 586 GGAAAAGGAGA----GAT-ATAA------- 603
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