Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00740 and BPUM_3418
See
Amino acid alignment /
Visit
BSNT_00740 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:31
# Commandline: needle
# -asequence dna-align/BSNT_00740.1.24716.seq
# -bsequence dna-align/BPUM_3418.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00740-BPUM_3418.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00740-BPUM_3418.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00740
# 2: BPUM_3418
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 666
# Identity: 311/666 (46.7%)
# Similarity: 311/666 (46.7%)
# Gaps: 243/666 (36.5%)
# Score: 580.0
#
#
#=======================================
BSNT_00740 1 ATGTTCGGAAAACATTCATTTTTACATGCCTTTTCTAGGGAACTGTACTT 50
||.||| |.| || ||| ||
BPUM_3418 1 ---------------------TTGCAT--CAT--------AA--GTA-TT 16
BSNT_00740 51 GTCATTTACAAAAATACCCGAGATAATGTGTACAAAATCAAAAAAGAAGG 100
.|||| ||||||| |.|.| |||..|||.|
BPUM_3418 17 ATCAT-----AAAATAC-----------TTTTC-------AAATGGAACG 43
BSNT_00740 101 ATGTT---------GA------AATGAAACTTGACCAGA--TTGATCTGA 133
||.|| || ||||||| .|.||| || |||||.||.
BPUM_3418 44 ATTTTTGGATAGGAGAGGTACGAATGAAA-ATCACC-GATGTTGATGTGC 91
BSNT_00740 134 ATAT--------CATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGA 175
|||| .||||| ||||| ||...|||.||.||.||||
BPUM_3418 92 ATATTTTAAATGAATTGA-------AAGAA-GATGCCCGCTTATCTATGA 133
BSNT_00740 176 GGGAATTAGGCAGAAA------AATTAAGCTGTCGCCTCCATCTGTGACA 219
||||||| |...||| ||||.|.| |||| ||..|.||..||
BPUM_3418 134 GGGAATT--GTCCAAACGAGTCAATTTATC---CGCC-CCTGCGGTAGCA 177
BSNT_00740 220 GAACGGGTAAGACAGCTTGAATCGTTTG-----GCA-TCATTAAGCAA-- 261
|| ||||..||.|.|| ||.| ||| ..||||...||
BPUM_3418 178 GA------AAGAGTGCGTAAA---TTAGAGGATGCAGGGATTATCGAAGG 218
BSNT_00740 262 -TACACGCTGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCA 310
||..||.|..||||..||.|.||||||.|.||||||....||..||||.
BPUM_3418 219 GTATTCGGTTCAGGTGAACTATAAAAAATTAGGGCTTATGATTGACTGCC 268
BSNT_00740 311 TTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGGTTCAA------- 353
|..||||||..||.||...|||||.|||.|| ||||
BPUM_3418 269 TGCTGGAAGTCACAGTGCTAAACGGGGAGTA--------TCAACGTTTTG 310
BSNT_00740 354 AAGCTATATTCAAACATTGC-----CGAATATTGAATTTTGC-TACCGGA 397
..|||.|..|.||.|| || ||....|| |||||| ||.||..
BPUM_3418 311 TGGCTTTTATGAATCA--GCACCCACGCGCTTT---TTTTGCGTATCGAG 355
BSNT_00740 398 TTGCGGGTGCAG-CCTGCT------ATATGCTGAAAATCAATGCCGAAAG 440
|.||.|| |||| |.|||| .||.|||| ||| |.||....
BPUM_3418 356 TGGCAGG-GCAGTCATGCTTTTTCATTAAGCTG----TCA--GTCGCGTC 398
BSNT_00740 441 CCTCGAAGCGGTAGAAG-----ATTTCA-------------TTAACAAAA 472
|||.||||...|.|||| | |||| ||.||||
BPUM_3418 399 CCTTGAAGAAATTGAAGCCTTTA-TTCAGGCAGTGTCTGGGTTTACAA-- 445
BSNT_00740 473 CATCGCCCTACGCGCAAACCGTCACTCA------------CG-----TCA 505
|||||||..|||| || ||.
BPUM_3418 446 ---------------AAACCGTATCTCATATCGTCTTATCCGAGCACTCC 480
BSNT_00740 506 TTTTC---------TCAGAAA---TTGACACGAA------------AAAC 531
||||| ||||.|| .|||.||.|| |||.
BPUM_3418 481 TTTTCCCACCCAGTTCAGGAACGTGTGAAACAAATAGAAGAGCCAGAAAT 530
BSNT_00740 532 GGGCGCGGTTAG---- 543
|..||.|.|.|.
BPUM_3418 531 GACCGTGATGAAATAA 546
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.