Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05760 and BPUM_3400
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:19
# Commandline: needle
# -asequence dna-align/BSNT_05760___ywfL.1.24716.seq
# -bsequence dna-align/BPUM_3400.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05760___ywfL-BPUM_3400.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05760___ywfL-BPUM_3400.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05760___ywfL
# 2: BPUM_3400
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 894
# Identity: 613/894 (68.6%)
# Similarity: 613/894 (68.6%)
# Gaps: 96/894 (10.7%)
# Score: 2020.5
#
#
#=======================================
BSNT_05760___ 1 ATGGCAAACCAACCGATTGATTTACTGATGCAGCCGAAATGGAGAGTCAT 50
|||..|||..||||.|||||.|||||||..||||||||||||.||.||||
BPUM_3400 1 ATGAAAAATGAACCTATTGAGTTACTGACACAGCCGAAATGGCGAATCAT 50
BSNT_05760___ 51 TGACCAATCCAGTCTCGGCCCTTTAT-TTGATGCGAAGCAATCCTTCGCA 99
.||.|||||.||.||||| .|||||| |.||..|||||||||||||.||.
BPUM_3400 51 AGATCAATCGAGCCTCGG-TCTTTATGTGGACCCGAAGCAATCCTTTGCG 99
BSNT_05760___ 100 ATGGATGATACGC--TGTGCATGTCCGTCGGAAAAGGCGTGTCGCCGGCG 147
||||||||||||| ||||| |||.|||||.||.||..|.||.||.|||
BPUM_3400 100 ATGGATGATACGCTTTGTGC--GTCGGTCGGGAAGGGACTCTCACCAGCG 147
BSNT_05760___ 148 ACAGCGCGCTCATGGGTGCACCACGATACAATTGTCCTTGGAATACAGGA 197
||||||||.||.||||||||.|||.||||||||||.|||||.||.|||||
BPUM_3400 148 ACAGCGCGTTCTTGGGTGCATCACAATACAATTGTGCTTGGGATTCAGGA 197
BSNT_05760___ 198 TACACGCCTCCCGTTTTTGCAGGATGG----CATCTCCTTGCTGGAGAGC 243
||||.|.||.||.|||.|.||.||||| .|.|||||.|..|.||||
BPUM_3400 198 TACAAGACTGCCTTTTCTCCAAGATGGTGTAAAGCTCCTCGAAGAAGAG- 246
BSNT_05760___ 244 GAAGGATACCGTGTGATCGTACGCAATTCCGGCGGTCTTGCCGTCGTATT 293
||.||.||.||.||.||||||||.||.|||||.|||||.||.||.||
BPUM_3400 247 ---GGCTATCGCGTCATTGTACGCAACTCAGGCGGCCTTGCTGTGGTGTT 293
BSNT_05760___ 294 GGATGACGGTGTTTTAAATATCTCTCTCATATTCGAGGACGAAAAGAAAG 343
||||||.|||||.||.|||.|.||..|.||.||.|.|||..||||.||.|
BPUM_3400 294 GGATGAAGGTGTATTGAATGTGTCGTTAATCTTTGCGGAACAAAAAAAGG 343
BSNT_05760___ 344 GCATCGATATAGACAAAGGATATGAAGCGATGGTCGAGCTGATGAGACGA 393
||||.|||||.|||...||.|||||.||||||||.||..||.|..|.||.
BPUM_3400 344 GCATTGATATTGACCGCGGGTATGATGCGATGGTGGAATTGGTCTGCCGG 393
BSNT_05760___ 394 ATGCTG----AGACCGTACAACGCAAAGATCGAAGCCTATGAAATTGAAG 439
|||||| | |||..|.|...|.||.|||||.||||||||||..|
BPUM_3400 394 ATGCTGTCTAA----GTATGAGGTGGACATTGAAGCTTATGAAATTGTCG 439
BSNT_05760___ 440 GGTCTTATTGTCCCGGCAGCTATGACCTCAGTATAAATGGCAAAAAGTTC 489
|.|||||||||||.|||||.||||||||.||.||.|||||.||.||.||.
BPUM_3400 440 GCTCTTATTGTCCGGGCAGTTATGACCTAAGCATCAATGGAAAGAAATTT 489
BSNT_05760___ 490 GCCGGCATCTCTCAG---AGACGCGTT-CGCGGCGGAGTTGCTGTTCAAA 535
||.|||||.|||||| ||| || ||.||.|||||||||||.||||
BPUM_3400 490 GCAGGCATTTCTCAGCGTAGA----TTACGTGGTGGAGTTGCTGTGCAAA 535
BSNT_05760___ 536 TTTATCTCTGTGCGGATAAAAGCGGCAGTGAAAGGGCCGACTTGATCAGA 585
|||||.|.|||||.|||..||||||..|.|||.|.||.|||||||||.|.
BPUM_3400 536 TTTATTTGTGTGCAGATGGAAGCGGGCGGGAACGTGCTGACTTGATCCGC 585
BSNT_05760___ 586 CGATTCTATCAAGCGGCGCTGAAA-GACAAACAAAACGATAAAA----AA 630
||.||.|||.|.||.|| ||.||| ||| ||||||.||.| ||
BPUM_3400 586 CGTTTTTATGACGCCGC-CTTAAAGGAC-----AAACGAGAAGAAGTGAA 629
BSNT_05760___ 631 GG-CGTCTATCCGGAAATACGTCCGGAAACGATGGCGTCCTTAAGTGAGC 679
|| |||.|.|||.||.||||..||.||.|||||||||||.||| |.||.
BPUM_3400 630 GGCCGTATTTCCTGATATACAACCTGATACGATGGCGTCTTTA--TCAGA 677
BSNT_05760___ 680 TT---CTGCAAAAAGACATCTCCGTACAAGACTT-AATGTTCGCT--TTA 723
.| |||.|.|| || |.|| |.|||.|||| |||
BPUM_3400 678 ATTAACTGGAGAA--------CC-------AATTGATTGTGCGCTTCTTA 712
BSNT_05760___ 724 -------TTGAC----GGAATTAAAAGCGTTAAG----CACC------CG 752
||.|| .||..||.||.||||||| ||.| ||
BPUM_3400 713 TGCGTCTTTTACTAGAAGAGCTACAAACGTTAAGTGATCAGCTGACAGCG 762
BSNT_05760___ 753 TCTTTACTCTGCCGGACTGTCCATTGATGAGGAAATGGAATTTGAGAAAA 802
| |.||||||..|...|||||..|..|.||||||||.||||
BPUM_3400 763 T----------CAGGACTGAACGCAGATGAACAGCTAGAATTTGAAAAAA 802
BSNT_05760___ 803 ACCTCGCCCGGATGGCTGAGCGGAATGCAAAGGTATTTGGGTGA 846
||.|..|.||||||..|||||||||||.||||||.||....|.|
BPUM_3400 803 ACATGACGCGGATGATTGAGCGGAATGAAAAGGTGTTCTCTTAA 846
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