Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05738 and BPUM_3389

See Amino acid alignment / Visit BSNT_05738 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:18
# Commandline: needle
#    -asequence dna-align/BSNT_05738___ywhD.1.24716.seq
#    -bsequence dna-align/BPUM_3389___ywhD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05738___ywhD-BPUM_3389___ywhD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05738___ywhD-BPUM_3389___ywhD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05738___ywhD
# 2: BPUM_3389___ywhD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 535
# Identity:     395/535 (73.8%)
# Similarity:   395/535 (73.8%)
# Gaps:          32/535 ( 6.0%)
# Score: 1422.5
# 
#
#=======================================

BSNT_05738___      1 ATGGAAGAAAAAAAGAAAAAATCAATCGGGTTTAAT---ATTATCAAAAG     47
                     |||||||..||||||||.|||.||||.||.||||||   ||||..||||.
BPUM_3389___y      1 ATGGAAGGTAAAAAGAAGAAACCAATTGGTTTTAATATCATTAAAAAAAC     50

BSNT_05738___     48 TGATCCGACAGACGGACACGGCGGTTTTGGCGTAGGGGCACTCAGCCTTG     97
                     .|||.|.||||||||||||||.||.|||||.|..||.||.||||||||.|
BPUM_3389___y     51 AGATGCAACAGACGGACACGGAGGCTTTGGAGCGGGTGCGCTCAGCCTAG    100

BSNT_05738___     98 ATAACATTTCTCCCGTATTCGTTGATGTAGAAGAAAAAGAAGCGTTCGTA    147
                     ||||||||||.||.||..||.||||||||||.|||||.|||||..||.|.
BPUM_3389___y    101 ATAACATTTCGCCGGTGATCATTGATGTAGAGGAAAAGGAAGCTGTCATT    150

BSNT_05738___    148 GACATCGGCGCCATGCATGCCCGCAGCACCGTTGAAAAAGGAATTAAATT    197
                     ||.||.||.||.||||||||..|.||..||||||||||||||||||||||
BPUM_3389___y    151 GATATTGGTGCTATGCATGCAAGAAGTGCCGTTGAAAAAGGAATTAAATT    200

BSNT_05738___    198 TCTCCCGAA---TAAAGAAGAAGTGCCGAACGGAAAACCATACTGGCTTG    244
                     |||   |||   .||||||||||||||||||||||||||.||.|||||.|
BPUM_3389___y    201 TCT---GAAAACAAAAGAAGAAGTGCCGAACGGAAAACCGTATTGGCTCG    247

BSNT_05738___    245 TGTGGGTAACGATTGACAGAAAAGAAGAGGGGCCTTATTACGCTGGTGTG    294
                     |.|||||.||.||||||.|.|.||||||.||.|||||.||.||.|||||.
BPUM_3389___y    248 TATGGGTGACCATTGACCGCAGAGAAGAAGGTCCTTACTATGCGGGTGTC    297

BSNT_05738___    295 ACAGCCTGTGAAATGACGGTCGA-----CAGAAGCATCAGAAGAGGCTAC    339
                     ||.||.||.||||||||.||.||     ||     |||.|..||||.||.
BPUM_3389___y    298 ACGGCTTGCGAAATGACCGTTGATCGTTCA-----ATCCGCCGAGGGTAT    342

BSNT_05738___    340 AAGTCGCTGCCTGAGCATGTGAATTTGATGGATAAATCCATGAAACGGAA    389
                     ||||||||.||.||||||||||||||.|||||||||||.|||||.||.||
BPUM_3389___y    343 AAGTCGCTTCCAGAGCATGTGAATTTAATGGATAAATCAATGAAGCGAAA    392

BSNT_05738___    390 AATCATCGTTGATAAAATGGACGACAGCTCGAAGCGTGTACTAGGCGAAT    439
                     ||||.|.||...|.|.|||||.||....|||||....||||| |||..||
BPUM_3389___y    393 AATCGTTGTCAGTCATATGGATGATGTATCGAAAAAAGTACT-GGCTGAT    441

BSNT_05738___    440 TTC-TGAAAAAGCATGATCAGGGCCTATGGGACCGTTCCTCAGATGAGTT    488
                     ||| ||||.|..|||.||.|.|..||||||||....|||.|||||||.||
BPUM_3389___y    442 TTCTTGAAGAGTCATAATGAAGCACTATGGGAAGCATCCACAGATGAATT    491

BSNT_05738___    489 AAA--AACGA--GCCTGCTTCCGGAAAACAATTAA    519
                     |||  ||.||  |.||| |.||.|||      |||
BPUM_3389___y    492 AAAAGAAGGATTGGCTG-TCCCTGAA------TAA    519


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