Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05711 and BPUM_3384
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:18
# Commandline: needle
# -asequence dna-align/BSNT_05711___ywiB.1.24716.seq
# -bsequence dna-align/BPUM_3384___ywiB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05711___ywiB-BPUM_3384___ywiB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05711___ywiB-BPUM_3384___ywiB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05711___ywiB
# 2: BPUM_3384___ywiB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 470
# Identity: 289/470 (61.5%)
# Similarity: 289/470 (61.5%)
# Gaps: 88/470 (18.7%)
# Score: 782.0
#
#
#=======================================
BSNT_05711___ 1 ATGAAGCAAGAGACACC-GATAACACTCCATGTGAAGTCTGTGATCGAGG 49
||||..|| |.||| .||..||.|.|||||.|||||.|||||
BPUM_3384___y 1 ATGACACA----AAACCAAATTTCAATTCATGTAAAGTCAGTGAT----- 41
BSNT_05711___ 50 ATGACGGAAACCA-AGA---AGTC----------ATCGAATTCCGCACCA 85
||||||| ||| ||.| ||||||||||||||.|
BPUM_3384___y 42 ------GAAACCAGAGACGGAGCCGGCTGAAACGATCGAATTCCGCACGA 85
BSNT_05711___ 86 CCGGATTTTAC-TATGTAAAACAAAAT---AAAGTGTATCTATCTTATTA 131
|.||| || |||..|.||.|.||| |||..||||||..||||..|
BPUM_3384___y 86 CTGGA----ACGTATCAAGAAAAGAATGAAAAAACGTATCTCACTTACCA 131
BSNT_05711___ 132 TGAAGAACACGACTTAGGCAAAGTCAAAACGATTGTGAAAGTAAGCGAAG 181
|||||||||.||..|.||..||||.|||||..||||||||.|.||.|||.
BPUM_3384___y 132 TGAAGAACATGAAATGGGTCAAGTAAAAACCGTTGTGAAAATGAGTGAAA 181
BSNT_05711___ 182 GCGAAGTCCTGGTCATGAGGTCAGGCGCTGTCAAAATGAATCAGCGTTTC 231
..|||.|..|.||||||||.|||||.||..|..|||||||.||||||||.
BPUM_3384___y 182 AAGAAATTTTTGTCATGAGATCAGGGGCCATTCAAATGAAGCAGCGTTTT 231
BSNT_05711___ 232 GTAAAGGGAG-------CTTC-CACAATTGCTAAATATAAAATGTCATTT 273
.|.|..|||| |.|| ||| |.||||..|||.||||.
BPUM_3384___y 232 CTCATCGGAGAAACGACCGTCACAC--------ATTATACGATGCCATTC 273
BSNT_05711___ 274 GGT------GAGCTTGAGCTGAAAACAAGCACA-AAATCG-ATTCAATCT 315
||| .|||||||..| ||||| |.||.| || |
BPUM_3384___y 274 GGTACACTACAGCTTGATGT--------GCACACACATGGCAT------T 309
BSNT_05711___ 316 GATCTCGATGAAGAAAAAGG-CCGTATCAGCATCGCATATGACATGCATG 364
|||||.||||..||.||.|| |.|...|| |||..|.||.||.|||| ||
BPUM_3384___y 310 GATCTGGATGTGGACAAGGGACTGCTGCA-CATTACGTACGATATGC-TG 357
BSNT_05711___ 365 TC-GGAGACGAGCAGGAGCATTTACAT--AATATGACGATCACGTATGAG 411
.| ||.||.||.||..||||||||||| |.||| ||||..|.||| |.
BPUM_3384___y 358 ACAGGGGAAGACCAAAAGCATTTACATACATTAT--CGATTTCATAT-AA 404
BSNT_05711___ 412 GGAGGAACTCACG--CATGA 429
||||| |.|.||| |||||
BPUM_3384___y 405 GGAGG-ATTTACGTTCATGA 423
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