Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03123 and BPUM_3381
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:37
# Commandline: needle
# -asequence dna-align/BSNT_03123___yocD.1.24716.seq
# -bsequence dna-align/BPUM_3381.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03123___yocD-BPUM_3381.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03123___yocD-BPUM_3381.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03123___yocD
# 2: BPUM_3381
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1105
# Identity: 604/1105 (54.7%)
# Similarity: 604/1105 (54.7%)
# Gaps: 260/1105 (23.5%)
# Score: 1350.0
#
#
#=======================================
BSNT_03123___ 1 ATGTA--------CGCCTCAAAACTGAAAAAGGGAGACGAAATCCGGATC 42
||||| |.|||..|| .||||||.||.| ||| .||
BPUM_3381 1 ATGTATACACCCTCTCCTTTAA----GAAAAGGCAGTC---ATC---TTC 40
BSNT_03123___ 43 GTGTC--TCCCGCGA---------CCAGCATGTCTATATTATCAAATGAA 81
||||| |.||.|.| ||||| ||.||||||.|.|||
BPUM_3381 41 GTGTCATTGCCCCAAGCCGAAGTGCCAGC------ATTTTATCAGAAGAA 84
BSNT_03123___ 82 GCAAAAATTCAAGC--AAAAACGGCGTTAGAACGC-TTAGGTTATCGGGT 128
|.||....|||||| ||||||| .|||| |.|| ||||||| |
BPUM_3381 85 GGAATCGCTCAAGCAAAAAAACG--TTTAG-AGGCTTTAGGTT------T 125
BSNT_03123___ 129 AACCATCGC---TGAACACGCA----AATGAATGTAACGAATTTGAT--- 168
.||..||.| ||.||| ||| ..||||||| ||..||.||
BPUM_3381 126 CACTGTCTCTTTTGGACA-GCACGTGTTTGAATGT---GATCTTCATTCC 171
BSNT_03123___ 169 TCATCCTCTATCGAGTCAAGAGTCCAAGATCTGCA-CGC-TGCCTTTTTT 216
|||||.|||||.|| .|| ||| ||.||..|||
BPUM_3381 172 TCATCATCTATTGA------------------ACACCGCTTGTCTGATTT 203
BSNT_03123___ 217 G-ATCCAGGC----------------GTCAAAGCGATTTT-AACGACACT 248
| || .|||| |||.|.|..||||| |.||.|| |
BPUM_3381 204 GCAT-AAGGCATTCACAGATGATGAGGTCGACGGTATTTTGACCGCCA-T 251
BSNT_03123___ 249 CGGAGGGTTTAATTCAAATCAGCTGCTGCGTTATCTTGATTACGAGAAAA 298
.||.||.||.||||..|||.|.||..|||.|||..|.||||||||....|
BPUM_3381 252 TGGTGGCTTCAATTGCAATGAACTTTTGCCTTACATCGATTACGACTTGA 301
BSNT_03123___ 299 TCAAACGACATCCAAAAATTCTGTGCGGCTATTCCGATATAACCGCTCTT 348
||...|..|||||.|||.||||.|||||.||....|||||.|||||.| |
BPUM_3381 302 TCCGTCAGCATCCTAAAGTTCTTTGCGGATACAGTGATATTACCGCAC-T 350
BSNT_03123___ 349 TGCAA-CGCTATT-TATCAAAAAACGGGTCTTGTTACGTATTCAGGCCCC 396
.|||| ||||||| .|.|.|||...|.| .|.||.||.||.||.||.|||
BPUM_3381 351 CGCAAGCGCTATTACAGCCAAATGTGAG-ATGGTGACATACTCTGGACCC 399
BSNT_03123___ 397 TTCTTTTCAACA--TTTGCAATGAAAAAAGGGCTTGATTATACACAAGAG 444
|.||||..|| |||..||||||..|.||| ||||||
BPUM_3381 400 --CATTTCTCCAGCTTTCAAATGAAGCAGGGG------------CAAGAG 435
BSNT_03123___ 445 -----------TATTTT-----CTTTCTTGCTG-----CGCTTCGGACGA 473
|||.|| |.|.||||.|| ||.| ||
BPUM_3381 436 GAGCAGACGGCTATGTTTCAAGCCTGCTTGATGAATGACGGT------GA 479
BSNT_03123___ 474 CCCGTTTGAAATTCTTCCTTCAAGTGAGTGGAGCGATGACCGC-TGGTTT 522
..|.|||||..|....|||||.|...|||||||.||||| .|| ||||.|
BPUM_3381 480 GTCTTTTGATGTGACCCCTTCGACCAAGTGGAGTGATGA-TGCGTGGTAT 528
BSNT_03123___ 523 TTGGATCAAGAAAACAGGCGTTTTTATCCTAATA-ACGGCCCTGTTGTAA 571
.|.|||||||..|||||.|..|||.||||.|..| |.|| |.||
BPUM_3381 529 CTTGATCAAGCGAACAGACAGTTTCATCCGACGAGATGG-------GGAA 571
BSNT_03123___ 572 TC---CAAGAAGGTTATGCGGAAGGTACTTTAATTGGCGGAAACTTATGC 618
|| ||.|||||....||.|||||.||.||...|||.||.|||.|.||.
BPUM_3381 572 TCTATCAGGAAGGAACAGCCGAAGGCACCTTGTATGGAGGGAACCTTTGT 621
BSNT_03123___ 619 ACGCTTAATTTGCTGCAGGGAACGGAGTATTTTCCTGAAA--CAGAACAT 666
||.||.||.||.|||||.||.||...||.|.|.|||.||| .||.||
BPUM_3381 622 ACACTGAACTTACTGCAAGGGACATCGTTTATGCCTCAAATCAAGGAC-- 669
BSNT_03123___ 667 ACTATTTTATTGATTGAAGATGATTATATGTCAGACATCC---ACATGTT 713
.|.||.|||||..|.||.||||||.| ||..|.|.||| |.|||||
BPUM_3381 670 GCCATCTTATTTGTGGAGGATGATGA---GTTGGCCTTCCCTGAAATGTT 716
BSNT_03123___ 714 TGACCGCGATCTGCAATCACTCATCCACCTCCCAGCTTTTTCA-CATGTA 762
.|.|.|.||.|| |||.||| ||.||.|| ||||.|
BPUM_3381 717 CGCCAGAGACCT-------------CACTTCC---CTCTTGCAGCATGCA 750
BSNT_03123___ 763 AAGGCGATT------TTG---ATCGGCAGATTTCAGAAGGCATCAAACGT 803
.||.|.||| ||| |||||..|.|||||||||..|||.||..|
BPUM_3381 751 GAGTCCATTAAAGGGTTGATCATCGGACGCTTTCAGAAGAAATCCAAGAT 800
BSNT_03123___ 804 ATCAATGGATCTTGTAAAAGCCAT----GATCGAAACA----------AA 839
..||...||.|.|.|.||...||| ||| ||||| ||
BPUM_3381 801 GACAGAAGAACATTTGAAGTTCATTTTAGAT--AAACACCCGATGCTTAA 848
BSNT_03123___ 840 AAAAGAATTATCCGGCATCCCGGTCATCGCAAATATAAATGCCGGACATA 889
|.| |||.||.||.|||....||.|..||..||||||||
BPUM_3381 849 ACA------------CATTCCCGTGATCTACGATGTCGATATCGGACATA 886
BSNT_03123___ 890 CCTCGCCAATTGCCACGTTCCCTATAGGAGG-AACATGCAGGATTGAAGC 938
|...|||..||..|||.||.||.||.||.|| |||.|.| |||
BPUM_3381 887 CGCAGCCGGTTTTCACCTTACCGATTGGCGGAAACGTTC--------AGC 928
BSNT_03123___ 939 TATTTCGGGTACATCACGAATATGGATTGA--TAAA------CATTAA-- 978
|| .||.|| |||.||||| || |.|| ||||.|
BPUM_3381 929 TA--GCGTGT-------GAAAATGGA--GACGTGAAGCTGCGCATTCATT 967
BSNT_03123___ 978 ----- 978
BPUM_3381 968 CATAA 972
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