Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03596 and BPUM_3372
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:08
# Commandline: needle
# -asequence dna-align/BSNT_03596.1.24716.seq
# -bsequence dna-align/BPUM_3372___mmgB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03596-BPUM_3372___mmgB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03596-BPUM_3372___mmgB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03596
# 2: BPUM_3372___mmgB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 950
# Identity: 589/950 (62.0%)
# Similarity: 589/950 (62.0%)
# Gaps: 172/950 (18.1%)
# Score: 1648.5
#
#
#=======================================
BSNT_03596 1 ATGGAAAT-CA-AACAAA---TCATGGTAGCTGGCGCAGGTCAGATGGGA 45
||| |.| || ||.||| |||||||.|.|||.||.||.||.||||||
BPUM_3372___m 1 ATG--AGTACAGAAGAAACCGTCATGGTCGTTGGAGCTGGACAAATGGGA 48
BSNT_03596 46 AGCGGAATTGCTCAA--------ACAG-CTGCCGACGCAGGCTTTTATGT 86
...||.|||||.||| |||| |||.|.||.|| ||
BPUM_3372___m 49 TCAGGCATTGCCCAAGTCTTTGCACAGTCTGGCTACACA---------GT 89
BSNT_03596 87 GCGGATGTATGATG----TGAATCCAGAGGCCGCGGAGGCAGGATTGAAA 132
.|.|.||.|||||| |||| |.||| |||| .|.
BPUM_3372___m 90 CCTGCTGCATGATGCATCTGAA--------------AAGCA-GATT-CAT 123
BSNT_03596 133 CG-GC-----------TGAAGAAACAGCTGGC----CCGTGATGCTGAGA 166
|| || |||..|||||.|||.| | || ||.||.|
BPUM_3372___m 124 CGAGCCATTTCCTCCATGACCAAACAACTGACAAAAC---GA-GCAGAAA 169
BSNT_03596 167 AAGGAAA--AAGGACCGAGACGGAAGT--GAAGAGCGTAATCAGCCGCAT 212
||||||| .|| ||.|...||.||| | |||...||..||||.||.|
BPUM_3372___m 170 AAGGAAAGCTAG--CCCATCAGGCAGTCCG-AGATATTACACAGCGGCTT 216
BSNT_03596 213 TTCGATTTCTCAAACGCTTGA--GGAGGCAGAGCATGCGGACATTGTGAT 260
..|| |.||||..|.||.| |||.|...||||.||..||.|.|||||
BPUM_3372___m 217 GCCG---TATCAACAGATTTAACGGACGTGCAGCAAGCTCACTTAGTGAT 263
BSNT_03596 261 TGAGGCTATCGCA---GAAAACATG-GCG-GCAAAAACTGAGATGTTTAA 305
|||.||| ||| |||.|.||| |.| |.|||||| |.||.|||.|
BPUM_3372___m 264 TGAAGCT---GCATCTGAACAAATGAGTGTGAAAAAAC--AAATCTTTGA 308
BSNT_03596 306 AACACTTGATCGCATTTGC-CCGCCTCATACGATTTTGGCCAGCAATACA 354
||||||||||| .|||||| ..|.|..|.|||||.||.||.|..||.|||
BPUM_3372___m 309 AACACTTGATC-AATTTGCAGAGGCGAAGACGATATTTGCAACAAACACA 357
BSNT_03596 355 TCTTCCTTGCCTATTACAGAAATCGCTGCTGTAAC----AAACCGGCCTC 400
|||||||||.|.||.||||||.|.||.|||||.|| |.|||||
BPUM_3372___m 358 TCTTCCTTGTCGATCACAGAATTAGCAGCTGTTACAGGAAGACCGG---- 403
BSNT_03596 401 AACGGGTTATTGGCATGCATTTTATGAATCCCGTCCCTGTAATGAAGCTG 450
|.|..||.|||||||||||.|||||||||||.||||||||.|||||.||.
BPUM_3372___m 404 AGCAAGTGATTGGCATGCACTTTATGAATCCTGTCCCTGTCATGAAACTC 453
BSNT_03596 451 GTTGAAGTGATTCGCG-GCT---------TGGCTAC----ATCAGAA--- 483
|||||.||.|||||.| ||| ||.|.|| ||| ||
BPUM_3372___m 454 GTTGAGGTCATTCGAGCGCTGCAAACGAGTGACGACACGTATC--AACTC 501
BSNT_03596 484 ------GAAACGGCCTTAGATGTTATGGCATTAGCGGAAAAGATGGGGAA 527
|||||.|| .|.|||||| ||| .||
BPUM_3372___m 502 GTTTGTGAAACAGC---------AAAGGCATT------AAA------CAA 530
BSNT_03596 528 AACAGCGGTAGAAGTCAATGATTTTCCTGGGTTTGTTTCCAACCGTGTGC 577
|||..|..|.|||||..|.||.||.||.||||||||.||.||.|||.|..
BPUM_3372___m 531 AACTCCAATTGAAGTGGAAGACTTCCCAGGGTTTGTATCAAATCGTATAT 580
BSNT_03596 578 TTCTTCCAATGATTAATGAAGCCATCTATTGCGTGTATGAGGGAGTGGC- 626
|..|.||||||||.|||||||||||||||..|.|.|||||.||.|||||
BPUM_3372___m 581 TGATGCCAATGATCAATGAAGCCATCTATACCCTTTATGAAGGCGTGGCA 630
BSNT_03596 627 GAAGCCGGAGGCAATAGATGAAGTGATGAAGCTGGGCATGAATCATCCGA 676
||.||.|.|.|| ||.||.|..||.||||.|||.||.||||||||.||.|
BPUM_3372___m 631 GATGCAGAAAGC-ATTGACGGTGTTATGACGCTTGGAATGAATCACCCAA 679
BSNT_03596 677 TGGGTCCGCTTGCAT-TAGCGGATTTTATCGGACTGGATACGTGTTTATC 725
||||.|||||| |.| |.||.|||||.||||||||.|||||.|||||||.
BPUM_3372___m 680 TGGGACCGCTT-CGTCTCGCTGATTTCATCGGACTAGATACATGTTTATT 728
BSNT_03596 726 AATTATGGAAGTCCTTCACTCAGGCCTTGGCGATTCCAAATACCGTCCTT 775
.||||||.|...||||||...|||.|||||.|||..|||.||.||.||||
BPUM_3372___m 729 TATTATGAATACCCTTCATGAAGGACTTGGGGATAGCAAGTATCGACCTT 778
BSNT_03596 776 GCCCGCTGCTCCGCAAGTATGTCAAAGCAGGCTGGCTTGGCAAAAAGAGC 825
|.||.||..|....||.||.||.||.|||||||||||.||||||||||
BPUM_3372___m 779 GTCCTCTTTTGAAAAAATACGTGAATGCAGGCTGGCTGGGCAAAAAGA-- 826
BSNT_03596 826 GGACGC-------GGTTTTTATGAC-TATGAGGAGAAGACTTCCTGA--- 864
| |||||||| .|| ||..|.||..| ||.|
BPUM_3372___m 827 -----CAAAGAAAGGTTTTTA-CACATACCACGACCA------CTCATAG 864
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