Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05673 and BPUM_3358
See
Amino acid alignment /
Visit
BSNT_05673 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:16
# Commandline: needle
# -asequence dna-align/BSNT_05673___spo0F.1.24716.seq
# -bsequence dna-align/BPUM_3358___spo0F.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05673___spo0F-BPUM_3358___spo0F.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05673___spo0F-BPUM_3358___spo0F.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05673___spo0F
# 2: BPUM_3358___spo0F
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 383
# Identity: 287/383 (74.9%)
# Similarity: 287/383 (74.9%)
# Gaps: 16/383 ( 4.2%)
# Score: 1072.0
#
#
#=======================================
BSNT_05673___ 1 ATGATGAATGAAAAAATTTTAATCGTTGATGATCAATACGGCATTCGTAT 50
||||||||.|||||||||||.||.|||||||||||.||.|||.|.||
BPUM_3358___s 1 ---ATGAATGAGAAAATTTTAATTGTCGATGATCAATATGGTATTAGAAT 47
BSNT_05673___ 51 TTTGCTAAATGAAGTGTTCAATAAAGAAGGCTACCAGACGTTTCAGGCTG 100
.|||.|.|||||||||||..||||||||||.||.||.||.||.||.||.|
BPUM_3358___s 48 ATTGTTGAATGAAGTGTTTCATAAAGAAGGTTATCAAACCTTCCAAGCAG 97
BSNT_05673___ 101 CGAACGGCCTGCAGGCGCTTGACATTGTGACAAA----AGAACGGCCCGA 146
|.||.||.||.||||||.|.||.|||||||.||| ||| ||..|
BPUM_3358___s 98 CCAATGGGCTTCAGGCGTTAGATATTGTGAAAAATCATAGA----CCAAA 143
BSNT_05673___ 147 CCTTGTGCTTTTGGACATGAAAATTCCCGGCATGGACGGAATCGAAATCT 196
|||||||.|..|.||.|||||.||||||||.|||||.|||||.|||||.|
BPUM_3358___s 144 CCTTGTGTTGCTTGATATGAAGATTCCCGGAATGGATGGAATTGAAATTT 193
BSNT_05673___ 197 TAAAACGGATGAAGGTCATTGACGAAAACATCCGGGTCATTATCATGACG 246
|||||||.|||||..|.|||||.|||.|||||||.|||||.||.|||||.
BPUM_3358___s 194 TAAAACGCATGAAATTAATTGATGAAGACATCCGTGTCATCATTATGACA 243
BSNT_05673___ 247 GCATACGGAGAGCTCGACATGATCCAAGAATCGAAGGAATTGGGCGCCCT 296
||.||.||.||..|.|||||||||||||||||.||.|||.|.||.||..|
BPUM_3358___s 244 GCCTATGGCGAATTAGACATGATCCAAGAATCCAAAGAACTCGGTGCTTT 293
BSNT_05673___ 297 GACGCACTTTGCCAAGCCGTTTGACATCGACGAAATCAGAGACGCCGTCA 346
||||||||||||.||.||.|||||.||.||.||.|||.||||.||.||||
BPUM_3358___s 294 GACGCACTTTGCGAAACCTTTTGATATTGATGAGATCCGAGATGCTGTCA 343
BSNT_05673___ 347 AAAAATATCTGCCCCT-GAAGTCTAACTGA--- 375
||.||||..||||.|| ||| .|.|||.|.
BPUM_3358___s 344 AAGAATACTTGCCGCTCGAA-ACAAACGGTTAG 375
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.