Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05658 and BPUM_3349
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:15
# Commandline: needle
# -asequence dna-align/BSNT_05658___tdk.1.24716.seq
# -bsequence dna-align/BPUM_3349___tdk.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05658___tdk-BPUM_3349___tdk.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05658___tdk-BPUM_3349___tdk.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05658___tdk
# 2: BPUM_3349___tdk
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 616
# Identity: 429/616 (69.6%)
# Similarity: 429/616 (69.6%)
# Gaps: 41/616 ( 6.7%)
# Score: 1407.5
#
#
#=======================================
BSNT_05658___ 1 ATGTACATAATGAAACAAAGCGGGTGGCTTGAGCTGATTTGCGGCAGCAT 50
|||||..|.||||||||||||||.||||||||..|.||.|||||.||.||
BPUM_3349___t 1 ATGTATGTGATGAAACAAAGCGGTTGGCTTGAAGTCATCTGCGGAAGTAT 50
BSNT_05658___ 51 GTTCTCGGGGAAATCTGAAGAGCTGATCAGAAGAGTGAAGAGAGCAACTT 100
|||.||.||.||.||.|||||..||||..|.||||..||.||.||.||.|
BPUM_3349___t 51 GTTTTCTGGAAAGTCGGAAGAATTGATTCGGAGAGCCAAAAGGGCCACCT 100
BSNT_05658___ 101 ATGCCAAGCAGGAAGTCAGGGTATTTAAGCCTGTAATTGATAACCGATAC 150
.||||||.||.|||||.|...||||.||.||.|..||||||||||||||.
BPUM_3349___t 101 TTGCCAAACAAGAAGTAAAAATATTCAAACCAGCGATTGATAACCGATAT 150
BSNT_05658___ 151 AG--CGAAGCTGCTGTTGTCTCCCATAATGGAACATCGAT-GACGAGCTA 197
|| | .|||| |.|||||.||.|||||.||..|||||.| ||.|.|.|
BPUM_3349___t 151 AGTAC-TAGCT-CAGTTGTTTCACATAACGGTTCATCGGTCGATGGGAT- 197
BSNT_05658___ 198 TGCCATTTCGTCTGCTGCGGACATTTGGGAT------CACATCAGTGAAA 241
|||..|..|.||..|....||||| .|| ||.|||| ||||
BPUM_3349___t 198 TGCAGTAGCCTCACCAAAAGACAT----AATAACGCACATATCA--GAAA 241
BSNT_05658___ 242 GTACAGATGTGATTGCGGTTGATGAAGTGCAGTTTTTTGATCAGGAAATT 291
|.||.|||||.||||...|.|||||.|||||.|||||||||.||..|||.
BPUM_3349___t 242 GAACCGATGTCATTGGCATAGATGAGGTGCAATTTTTTGATGAGACAATC 291
BSNT_05658___ 292 GTTGAGGTTTTATCATCTC---TTGCCGATAAAGGCTACCGTGTGATAGC 338
.|||| ..||.||| ||| |.||.||||||||.|||||.||.||.|.
BPUM_3349___t 292 ATTGA--CATTGTCA-CTCAATTGGCTGATAAAGGTTACCGAGTCATTGT 338
BSNT_05658___ 339 AGCAGGCCTTGATATGGATTTTAGGGGAGAGCCGTTCGGTGTCGTCCCGA 388
.||||||||||||...||.|||||.||||||||.||.|||||.||.|||.
BPUM_3349___t 339 TGCAGGCCTTGATCAAGACTTTAGAGGAGAGCCATTTGGTGTTGTTCCGC 388
BSNT_05658___ 389 ATATCATGGCGAT-TGCGGAAAGTGTGACAAAGCTGCAAGCCGTCTGTTC 437
||.|.||||| || |||.||...|||.|||||.||.|||||.||.|||||
BPUM_3349___t 389 ATTTAATGGC-ATGTGCAGAGCTTGTAACAAAACTTCAAGCAGTTTGTTC 437
BSNT_05658___ 438 TGTTTGCGGATCACCGGCGAGCAGAACACAGCGCCTCATTGACGGCAAAC 487
.||.|||||.||.||.|||||.||||||||.|||.|.||.|||||.||||
BPUM_3349___t 438 GGTATGCGGCTCCCCAGCGAGTAGAACACAACGCTTAATCGACGGTAAAC 487
BSNT_05658___ 488 CTGCTTCTTACGATGATCCGGTCATTTTGGTTGGTGCATCTGAATCATAT 537
|.||.||.||.||||||||..|.|||||.||.|||||....||||||||.
BPUM_3349___t 488 CCGCATCCTATGATGATCCCATTATTTTAGTAGGTGCGCAGGAATCATAC 537
BSNT_05658___ 538 GAAGCAAGATGCAGACATCATCACGAAGTCCCAGG--------------- 572
||||||.|||||||||||||.||.|||||.|||.|
BPUM_3349___t 538 GAAGCACGATGCAGACATCACCATGAAGTACCAAGGCTTGACGTTGGTAC 587
BSNT_05658___ 573 AAAATCTAAAAAATAG 588
||.|..|.|.||.||.
BPUM_3349___t 588 AACACTTGACAATTAA 603
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