Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05655 and BPUM_3347
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:15
# Commandline: needle
# -asequence dna-align/BSNT_05655___ywkB.1.24716.seq
# -bsequence dna-align/BPUM_3347___ywkB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05655___ywkB-BPUM_3347___ywkB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05655___ywkB-BPUM_3347___ywkB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05655___ywkB
# 2: BPUM_3347___ywkB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 976
# Identity: 698/976 (71.5%)
# Similarity: 698/976 (71.5%)
# Gaps: 35/976 ( 3.6%)
# Score: 2368.0
#
#
#=======================================
BSNT_05655___ 1 -TTGAGCATCTTAGATATCTTAATCCTCCTGGCGCCGATCTTCTTTGTTA 49
|.|| |.|.|||.||||.||.||||||||.||.|||||.||.||.||||
BPUM_3347___y 1 ATGGA-CTTTTTAAATATTTTGATCCTCCTAGCACCGATTTTTTTCGTTA 49
BSNT_05655___ 50 TCGTGCTGGGTTGGTTTGCAGGACATTTTGGAAGTTATGATGCCAAGTCG 99
|||.||||||||||||.|||||..|.||.||.||.|||||.||.||.||.
BPUM_3347___y 50 TCGCGCTGGGTTGGTTCGCAGGGAACTTCGGCAGCTATGACGCTAAATCT 99
BSNT_05655___ 100 GCAAAAGGGGTAAGTACGTTAGTAACGAAATACGCACTTCCAGCTCACTT 149
||||||||.||||||||..|.||.||.||.||.||..|.|||||.|||||
BPUM_3347___y 100 GCAAAAGGTGTAAGTACACTTGTTACAAAGTATGCTTTGCCAGCGCACTT 149
BSNT_05655___ 150 TATCGCTGGTATTTTGACAACTTCCAGAAGTGAATTTTTATCA--CAAGT 197
||||||..|.|||.||.|||| .|||.|||..||.||.||| | |||.|
BPUM_3347___y 150 TATCGCCAGCATTCTGTCAAC-ACCAAAAGATAAATTCTAT-AGTCAAAT 197
BSNT_05655___ 198 ACCTTTAATGATTTCTTTAATTATTGGGATTGTTGGTTTCTATATCATCA 247
.||.||..|..||.|.||.|||.|.||.||.||||||||.||||||||.|
BPUM_3347___y 198 TCCATTTTTCGTTGCATTGATTTTCGGAATCGTTGGTTTTTATATCATTA 247
BSNT_05655___ 248 TTCTTTTGGTTTGCAGATTTATTTTCAAGTATGATTTAACGAACTCATCT 297
|.|||||.|||...|.||||...||.||.|||||||||||..|.||||||
BPUM_3347___y 248 TCCTTTTAGTTACGAAATTTGCGTTTAAATATGATTTAACAGATTCATCT 297
BSNT_05655___ 298 GTATTTTCTTTGAACTCTGCACAGCCGACATTCGCATTTATGGGTATCCC 347
||.||.||.||.|||||.|||||.|||||.||.|||||||||||.||.||
BPUM_3347___y 298 GTTTTCTCGTTAAACTCAGCACAACCGACCTTTGCATTTATGGGGATTCC 347
BSNT_05655___ 348 GGTATTGGGAAGCTTATTCGGAGCGAATGAAGTTGCGATTCCGATCGCGG 397
|||.|||||.||.|||||.||.||..|.||||||||.||||||||.||..
BPUM_3347___y 348 GGTCTTGGGCAGTTTATTTGGGGCTCAAGAAGTTGCAATTCCGATTGCTA 397
BSNT_05655___ 398 TCACAGGTATCGTGGTTAACGCGATT-CTTGATCCGCTCGCGATCATTAT 446
|.||.||.||.||.||.||.|| ||| ||||||||..|.|||||.|||.|
BPUM_3347___y 398 TTACCGGAATAGTTGTAAATGC-ATTGCTTGATCCAATTGCGATTATTGT 446
BSNT_05655___ 447 CGCTACTGTTGGTGAGTCTTCTAAGA--AAAACGAAGAG----AG-TGGC 489
..|.|||||.||||| ||.| ||||.|||.|| || ||||
BPUM_3347___y 447 GTCAACTGTCGGTGA-------AAAAACAAAAGGAAAAGCCAAAGATGGC 489
BSNT_05655___ 490 GACAGCTTCTGGAAGATGACAGGAAAATCAATCCTGCATGGTCTTTGTGA 539
||.||.|||...||.|||||...||||.|.||..||||.|||.|.|..||
BPUM_3347___y 490 GAAAGTTTCCTAAAAATGACGACAAAAGCGATTTTGCACGGTTTATCAGA 539
BSNT_05655___ 540 GCCGCTTGCAGCTGCTCCGTTAATCAGTATGATCTTGGTGCT----GGTT 585
||||||||||..|||.||..||...|||||.|||.|.||.|| ||.|
BPUM_3347___y 540 GCCGCTTGCACTTGCACCACTAGCTAGTATCATCCTTGTACTTTTAGGAT 589
BSNT_05655___ 586 TTCAATTTCACTCTTCCTGAGCTGGGTGTTAAAATGCTTGATCAGCTTGG 635
||.|| ||.|||||..|.||...|.|||||||.||..|..||||
BPUM_3347___y 590 TTAAA-------CTACCTGAAATTGGACATGAAATGCTAGAGGAAATTGG 632
BSNT_05655___ 636 AAGCACAACATCTGGTGTTGCTCTCTTTGCTGTTGGTGTTACCGTTGGTA 685
|||....||.||.||.|||||.||.||.||.||.|||||.||.||.||||
BPUM_3347___y 633 AAGTGTGACGTCAGGGGTTGCGCTATTCGCAGTCGGTGTCACTGTAGGTA 682
BSNT_05655___ 686 TTCGTAAAATTAAACTCAGTATGCCGGCTATCGGTATTGCGTTACTAAAA 735
||||.|||||||||||.||..|.||.|||.||.|||||||..||.|||||
BPUM_3347___y 683 TTCGAAAAATTAAACTGAGCTTACCTGCTTTCAGTATTGCACTATTAAAA 732
BSNT_05655___ 736 GTTGCGGTTCAGCCTGCGT-TAATGTTCCTGATTGCTCTTGCTATCGGAC 784
||.||.|||||.|| ||.| |.||||..||.||.||..||..|||.||.|
BPUM_3347___y 733 GTAGCTGTTCAACC-GCTTCTTATGTATCTTATCGCCATTCTTATGGGTC 781
BSNT_05655___ 785 TTCCGGCTGACCAAACAACAAAAGCAATCCTTCTTGTTGCATTCCCTGGT 834
||.|||||||..|||..||||||||..|..|.||||||||.|||||.|||
BPUM_3347___y 782 TTTCGGCTGATGAAATTACAAAAGCTGTATTGCTTGTTGCCTTCCCAGGT 831
BSNT_05655___ 835 TCTGCCGTTGCAGCCATGATTGCGACTCGTTTCGAGAAACAAGAAGAAGA 884
||.||.||||||||.|||||.|||||.||.||.|||||||||||.|.|||
BPUM_3347___y 832 TCAGCTGTTGCAGCGATGATCGCGACACGATTTGAGAAACAAGAGGCAGA 881
BSNT_05655___ 885 AACTGCAACTGCGTTTGTGGTCAGTGCGATTCTGTCATTGATTTCACTTC 934
|||.|||.|.||.||||||.|||||||.||..|||||.|.||..||.|.|
BPUM_3347___y 882 AACGGCATCCGCATTTGTGATCAGTGCCATCATGTCACTCATAACATTAC 931
BSNT_05655___ 935 CAATCATTATCGCGCTTACTGCGTAA 960
|.||||||||.||||||||.|..|||
BPUM_3347___y 932 CGATCATTATTGCGCTTACCGTATAA 957
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