Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05652 and BPUM_3345

See Amino acid alignment / Visit BSNT_05652 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:14
# Commandline: needle
#    -asequence dna-align/BSNT_05652___prfA.1.24716.seq
#    -bsequence dna-align/BPUM_3345___prfA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05652___prfA-BPUM_3345___prfA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05652___prfA-BPUM_3345___prfA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05652___prfA
# 2: BPUM_3345___prfA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1085
# Identity:     868/1085 (80.0%)
# Similarity:   868/1085 (80.0%)
# Gaps:          31/1085 ( 2.9%)
# Score: 3428.5
# 
#
#=======================================

BSNT_05652___      1 GTGTTAGACCGTTTAAAATCAATTGAAGAACGATACGAGAAATTAAATGA     50
                     .|||||||||||||||||||||||||||||||.||.||.||.||||||||
BPUM_3345___p      1 ATGTTAGACCGTTTAAAATCAATTGAAGAACGCTATGAAAAGTTAAATGA     50

BSNT_05652___     51 GCTTTTGAGCGATCCAGAAGTAGTCAACGATCCGAAAAAGCTAAGAGAAT    100
                     ...|||.||.|||||.|||||.||.|||||.||.|..||.||..|.||||
BPUM_3345___p     51 ATATTTAAGTGATCCTGAAGTGGTGAACGACCCTACGAAACTTCGTGAAT    100

BSNT_05652___    101 ATTCAAAAGAGCAATCTGATATACAAGAAACAGTTGACGTATATAGACAA    150
                     ||||.||.||.|||||||||||.||||||||.|||||.||||||||||||
BPUM_3345___p    101 ATTCGAAGGAACAATCTGATATTCAAGAAACTGTTGAGGTATATAGACAA    150

BSNT_05652___    151 TACAGAGATGCGTCA---GAACAGCTG-GCTGATGCAAAAGCGATGCTTG    196
                     ||..|   ||||.||   ||.|||.|| || ||.||.|||||.|||||.|
BPUM_3345___p    151 TATCG---TGCGGCATACGACCAGTTGAGC-GAAGCGAAAGCAATGCTGG    196

BSNT_05652___    197 AAGAGAAGCTGGATGCTGAGATGCGCGACATGGTGAAGGAAGAGATTTCT    246
                     ||||.|||||||||||.|||||||||||||||||.||.|||||.|||||.
BPUM_3345___p    197 AAGATAAGCTGGATGCCGAGATGCGCGACATGGTCAAAGAAGAAATTTCA    246

BSNT_05652___    247 GAACTTCAGA-AGGAAACGGAAACACTGTCAGA--ACG-GCTGAAGGTGC    292
                     ||.| |||.| |||||||.||   ||..|.|||  ||| ||||||..|..
BPUM_3345___p    247 GAGC-TCACAGAGGAAACAGA---ACGTTTAGAAGACGAGCTGAAAATCT    292

BSNT_05652___    293 TCCTGATCCCGAAAGATCCTAATGACGACAAAAACGTTATCATGGAGATC    342
                     |.|||||||||||||||||.||||||.|.|||||||||||..|||||.|.
BPUM_3345___p    293 TGCTGATCCCGAAAGATCCAAATGACAATAAAAACGTTATTGTGGAGGTT    342

BSNT_05652___    343 CGCGGGGCTGCGGGAGGCGAGGAAGCCGCTTTATTCGCGGGCAATCTGTA    392
                     ||.||.||.||.|||||.||.||.|||||..|.||.||.||.||.||.||
BPUM_3345___p    343 CGTGGTGCAGCAGGAGGAGAAGAGGCCGCGCTTTTTGCAGGAAACCTTTA    392

BSNT_05652___    393 CAGAATGTATTCCCGTTATGCTGAGCTTCAGGGCTGGAAAACAGAGGTCA    442
                     |.|.|||||...||||||||||||..|.||||||||||||||||||||||
BPUM_3345___p    393 CCGTATGTACAGCCGTTATGCTGAAATGCAGGGCTGGAAAACAGAGGTCA    442

BSNT_05652___    443 TGGAAGCGAATGTAACCGGAACGGGCGGCTACAAAGAGATCATCTTTATG    492
                     |||||||||.|||.||.|||||.|||||.||.||||||||.|||||||||
BPUM_3345___p    443 TGGAAGCGAGTGTGACTGGAACTGGCGGTTATAAAGAGATTATCTTTATG    492

BSNT_05652___    493 ATTA-CAGGAAGCGGCGCGTATTCTAAACTCAAATATGAAAACGGCGCCC    541
                     |||| |.|||| .|||||.|||||.|||||.||.|.||||||||||||.|
BPUM_3345___p    493 ATTAGCGGGAA-AGGCGCATATTCGAAACTAAAGTTTGAAAACGGCGCAC    541

BSNT_05652___    542 ACCGCGTACAGCGTGTTCCGGAAACAGAATCAGGCGGACGCATCCATACA    591
                     |||||||.|||||.||||||||||||||||||||.|||||.||.||||||
BPUM_3345___p    542 ACCGCGTGCAGCGCGTTCCGGAAACAGAATCAGGTGGACGGATTCATACA    591

BSNT_05652___    592 TCCACTGCAACAGTGGCATGTCTT-CCTGAGGCAGAAGAGGTAGAGGTCG    640
                     ||.||.||.|||||||| |||||| ||||||||.|||||.||.||..|.|
BPUM_3345___p    592 TCAACAGCGACAGTGGC-TGTCTTGCCTGAGGCTGAAGAAGTTGAAATTG    640

BSNT_05652___    641 ACATCCATGAGAAGGATATCCGTGTCGATACATTTGCTTCAAGCGGACCG    690
                     |.||||||||.|||||.||||||||.|||||.||..|.|||||.|||||.
BPUM_3345___p    641 ATATCCATGAAAAGGACATCCGTGTAGATACTTTCACATCAAGTGGACCT    690

BSNT_05652___    691 GGCGGACAAAGCGTTAACACAACAATGTCTGCGGTTCGTCTGACTCACTT    740
                     |||||||||||.|||||||||||.||||||||.|||||..|.||||||.|
BPUM_3345___p    691 GGCGGACAAAGTGTTAACACAACCATGTCTGCTGTTCGATTAACTCACCT    740

BSNT_05652___    741 GCCGACAGGTGTTGTTGTATCATGCCAGGATGAAAAATCTCAAATTAAGA    790
                     .||.|||||.||.||||||||.||.||||||||.|||||.|||||.||.|
BPUM_3345___p    741 TCCAACAGGAGTGGTTGTATCCTGTCAGGATGAGAAATCACAAATCAAAA    790

BSNT_05652___    791 ACAAAGAAAAAGCAATGAAGGTTCTCCGTGCCAGAATCTATGATAAATTT    840
                     |||||||.|||||.|||||.||..|.|||||.|||||.|||||||||||.
BPUM_3345___p    791 ACAAAGAGAAAGCCATGAAAGTATTACGTGCGAGAATTTATGATAAATTC    840

BSNT_05652___    841 CAGCAGGAAGCCCAGGCTGAATATGATCAAACACGGAAATCAGCAGTCGG    890
                     ||||..|||||.|||||||||||||||||||||||.|||||.||.||.||
BPUM_3345___p    841 CAGCGTGAAGCACAGGCTGAATATGATCAAACACGTAAATCTGCTGTTGG    890

BSNT_05652___    891 ATCTGGTGACCGCTCTGAACGTATCCGCACATACAACTTCCCGCAAAACC    940
                     |.|.||.||.||.||.||.||||||||.||.|||||||||||||||||||
BPUM_3345___p    891 AACAGGGGATCGTTCAGAGCGTATCCGTACGTACAACTTCCCGCAAAACC    940

BSNT_05652___    941 GTGTGACGGATCACAGAATCGGTTTGACGATTCAAAAGCTTGATCAGATT    990
                     ||||.||.||.|||.|.|||||.|||||||||||||||||||||||.|||
BPUM_3345___p    941 GTGTAACAGACCACCGCATCGGATTGACGATTCAAAAGCTTGATCAAATT    990

BSNT_05652___    991 CTTGAAGGAAAACTTGACGAAGTGGTTGAAGCGCTGATTGTTGAAGATCA   1040
                     .|.|||||||||||||||||.||..||||.||..|.|||.|.|||||.||
BPUM_3345___p    991 TTAGAAGGAAAACTTGACGAGGTCATTGATGCATTAATTATGGAAGACCA   1040

BSNT_05652___   1041 GGCAAGCAAGCTTCA----GCAGTCGGAAGGTTAA   1071
                     .|||||.||||||||    |||     ||  .|||
BPUM_3345___p   1041 AGCAAGAAAGCTTCAAAATGCA-----AA--ATAA   1068


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