Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05652 and BPUM_3345
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:14
# Commandline: needle
# -asequence dna-align/BSNT_05652___prfA.1.24716.seq
# -bsequence dna-align/BPUM_3345___prfA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05652___prfA-BPUM_3345___prfA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05652___prfA-BPUM_3345___prfA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05652___prfA
# 2: BPUM_3345___prfA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1085
# Identity: 868/1085 (80.0%)
# Similarity: 868/1085 (80.0%)
# Gaps: 31/1085 ( 2.9%)
# Score: 3428.5
#
#
#=======================================
BSNT_05652___ 1 GTGTTAGACCGTTTAAAATCAATTGAAGAACGATACGAGAAATTAAATGA 50
.|||||||||||||||||||||||||||||||.||.||.||.||||||||
BPUM_3345___p 1 ATGTTAGACCGTTTAAAATCAATTGAAGAACGCTATGAAAAGTTAAATGA 50
BSNT_05652___ 51 GCTTTTGAGCGATCCAGAAGTAGTCAACGATCCGAAAAAGCTAAGAGAAT 100
...|||.||.|||||.|||||.||.|||||.||.|..||.||..|.||||
BPUM_3345___p 51 ATATTTAAGTGATCCTGAAGTGGTGAACGACCCTACGAAACTTCGTGAAT 100
BSNT_05652___ 101 ATTCAAAAGAGCAATCTGATATACAAGAAACAGTTGACGTATATAGACAA 150
||||.||.||.|||||||||||.||||||||.|||||.||||||||||||
BPUM_3345___p 101 ATTCGAAGGAACAATCTGATATTCAAGAAACTGTTGAGGTATATAGACAA 150
BSNT_05652___ 151 TACAGAGATGCGTCA---GAACAGCTG-GCTGATGCAAAAGCGATGCTTG 196
||..| ||||.|| ||.|||.|| || ||.||.|||||.|||||.|
BPUM_3345___p 151 TATCG---TGCGGCATACGACCAGTTGAGC-GAAGCGAAAGCAATGCTGG 196
BSNT_05652___ 197 AAGAGAAGCTGGATGCTGAGATGCGCGACATGGTGAAGGAAGAGATTTCT 246
||||.|||||||||||.|||||||||||||||||.||.|||||.|||||.
BPUM_3345___p 197 AAGATAAGCTGGATGCCGAGATGCGCGACATGGTCAAAGAAGAAATTTCA 246
BSNT_05652___ 247 GAACTTCAGA-AGGAAACGGAAACACTGTCAGA--ACG-GCTGAAGGTGC 292
||.| |||.| |||||||.|| ||..|.||| ||| ||||||..|..
BPUM_3345___p 247 GAGC-TCACAGAGGAAACAGA---ACGTTTAGAAGACGAGCTGAAAATCT 292
BSNT_05652___ 293 TCCTGATCCCGAAAGATCCTAATGACGACAAAAACGTTATCATGGAGATC 342
|.|||||||||||||||||.||||||.|.|||||||||||..|||||.|.
BPUM_3345___p 293 TGCTGATCCCGAAAGATCCAAATGACAATAAAAACGTTATTGTGGAGGTT 342
BSNT_05652___ 343 CGCGGGGCTGCGGGAGGCGAGGAAGCCGCTTTATTCGCGGGCAATCTGTA 392
||.||.||.||.|||||.||.||.|||||..|.||.||.||.||.||.||
BPUM_3345___p 343 CGTGGTGCAGCAGGAGGAGAAGAGGCCGCGCTTTTTGCAGGAAACCTTTA 392
BSNT_05652___ 393 CAGAATGTATTCCCGTTATGCTGAGCTTCAGGGCTGGAAAACAGAGGTCA 442
|.|.|||||...||||||||||||..|.||||||||||||||||||||||
BPUM_3345___p 393 CCGTATGTACAGCCGTTATGCTGAAATGCAGGGCTGGAAAACAGAGGTCA 442
BSNT_05652___ 443 TGGAAGCGAATGTAACCGGAACGGGCGGCTACAAAGAGATCATCTTTATG 492
|||||||||.|||.||.|||||.|||||.||.||||||||.|||||||||
BPUM_3345___p 443 TGGAAGCGAGTGTGACTGGAACTGGCGGTTATAAAGAGATTATCTTTATG 492
BSNT_05652___ 493 ATTA-CAGGAAGCGGCGCGTATTCTAAACTCAAATATGAAAACGGCGCCC 541
|||| |.|||| .|||||.|||||.|||||.||.|.||||||||||||.|
BPUM_3345___p 493 ATTAGCGGGAA-AGGCGCATATTCGAAACTAAAGTTTGAAAACGGCGCAC 541
BSNT_05652___ 542 ACCGCGTACAGCGTGTTCCGGAAACAGAATCAGGCGGACGCATCCATACA 591
|||||||.|||||.||||||||||||||||||||.|||||.||.||||||
BPUM_3345___p 542 ACCGCGTGCAGCGCGTTCCGGAAACAGAATCAGGTGGACGGATTCATACA 591
BSNT_05652___ 592 TCCACTGCAACAGTGGCATGTCTT-CCTGAGGCAGAAGAGGTAGAGGTCG 640
||.||.||.|||||||| |||||| ||||||||.|||||.||.||..|.|
BPUM_3345___p 592 TCAACAGCGACAGTGGC-TGTCTTGCCTGAGGCTGAAGAAGTTGAAATTG 640
BSNT_05652___ 641 ACATCCATGAGAAGGATATCCGTGTCGATACATTTGCTTCAAGCGGACCG 690
|.||||||||.|||||.||||||||.|||||.||..|.|||||.|||||.
BPUM_3345___p 641 ATATCCATGAAAAGGACATCCGTGTAGATACTTTCACATCAAGTGGACCT 690
BSNT_05652___ 691 GGCGGACAAAGCGTTAACACAACAATGTCTGCGGTTCGTCTGACTCACTT 740
|||||||||||.|||||||||||.||||||||.|||||..|.||||||.|
BPUM_3345___p 691 GGCGGACAAAGTGTTAACACAACCATGTCTGCTGTTCGATTAACTCACCT 740
BSNT_05652___ 741 GCCGACAGGTGTTGTTGTATCATGCCAGGATGAAAAATCTCAAATTAAGA 790
.||.|||||.||.||||||||.||.||||||||.|||||.|||||.||.|
BPUM_3345___p 741 TCCAACAGGAGTGGTTGTATCCTGTCAGGATGAGAAATCACAAATCAAAA 790
BSNT_05652___ 791 ACAAAGAAAAAGCAATGAAGGTTCTCCGTGCCAGAATCTATGATAAATTT 840
|||||||.|||||.|||||.||..|.|||||.|||||.|||||||||||.
BPUM_3345___p 791 ACAAAGAGAAAGCCATGAAAGTATTACGTGCGAGAATTTATGATAAATTC 840
BSNT_05652___ 841 CAGCAGGAAGCCCAGGCTGAATATGATCAAACACGGAAATCAGCAGTCGG 890
||||..|||||.|||||||||||||||||||||||.|||||.||.||.||
BPUM_3345___p 841 CAGCGTGAAGCACAGGCTGAATATGATCAAACACGTAAATCTGCTGTTGG 890
BSNT_05652___ 891 ATCTGGTGACCGCTCTGAACGTATCCGCACATACAACTTCCCGCAAAACC 940
|.|.||.||.||.||.||.||||||||.||.|||||||||||||||||||
BPUM_3345___p 891 AACAGGGGATCGTTCAGAGCGTATCCGTACGTACAACTTCCCGCAAAACC 940
BSNT_05652___ 941 GTGTGACGGATCACAGAATCGGTTTGACGATTCAAAAGCTTGATCAGATT 990
||||.||.||.|||.|.|||||.|||||||||||||||||||||||.|||
BPUM_3345___p 941 GTGTAACAGACCACCGCATCGGATTGACGATTCAAAAGCTTGATCAAATT 990
BSNT_05652___ 991 CTTGAAGGAAAACTTGACGAAGTGGTTGAAGCGCTGATTGTTGAAGATCA 1040
.|.|||||||||||||||||.||..||||.||..|.|||.|.|||||.||
BPUM_3345___p 991 TTAGAAGGAAAACTTGACGAGGTCATTGATGCATTAATTATGGAAGACCA 1040
BSNT_05652___ 1041 GGCAAGCAAGCTTCA----GCAGTCGGAAGGTTAA 1071
.|||||.|||||||| ||| || .|||
BPUM_3345___p 1041 AGCAAGAAAGCTTCAAAATGCA-----AA--ATAA 1068
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