Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05651 and BPUM_3344

See Amino acid alignment / Visit BSNT_05651 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:14
# Commandline: needle
#    -asequence dna-align/BSNT_05651___ywkE.1.24716.seq
#    -bsequence dna-align/BPUM_3344___hemK.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05651___ywkE-BPUM_3344___hemK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05651___ywkE-BPUM_3344___hemK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05651___ywkE
# 2: BPUM_3344___hemK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 957
# Identity:     566/957 (59.1%)
# Similarity:   566/957 (59.1%)
# Gaps:         159/957 (16.6%)
# Score: 1455.5
# 
#
#=======================================

BSNT_05651___      1 -------ATGA--AG---ACGATATTCGAAGCCCTGAAATGGGCTTCTTC     38
                            ||.|  ||   ||.||.||.||||||||.||||||||||||||
BPUM_3344___h      1 ATGCAAAATAATCAGCGAACCATCTTTGAAGCCCTTAAATGGGCTTCTTC     50

BSNT_05651___     39 TTATTTAACCGAAGCGGGAAGAGAAGAAAATGCGGCCGAGCTCCTATTGC     88
                     ||..|||||.|||||.||.|||||..||||.||.||.|||||.||.|||.
BPUM_3344___h     51 TTTGTTAACGGAAGCCGGTAGAGACCAAAACGCAGCAGAGCTTCTTTTGA    100

BSNT_05651___     89 TTTATGATACCGGAATGGAG-AGAAGCAAGCTGCTCGCAAGCTTACAGGA    137
                     |..||| ||..|||....|| |||||..|.||.||.|||.|.||.||.||
BPUM_3344___h    101 TGCATG-TATTGGACCTAAGCAGAAGTGAACTTCTTGCACGTTTTCATGA    149

BSNT_05651___    138 ACCGATT----GGTGAAGACGAACTG-TAT--CGC---TTTAAGCGTCAC    177
                     .|.| ||    |.|||..|.||.|.| |||  |||   |||    |||||
BPUM_3344___h    150 TCAG-TTGCCAGATGAGCAAGATCGGTTATTCCGCGAGTTT----GTCAC    194

BSNT_05651___    178 GTTGAGATGCATAAAGAGGGCGTGCCGGTTCAATACATTATAGGAAAAGA    227
                          |..|||.||..|.||||||||.||||||.|..|.|||||.|..||
BPUM_3344___h    195 -----GCAGCACAAGAAAGGCGTGCCAGTTCAACATCTAATAGGTATTGA    239

BSNT_05651___    228 GTTTTTTTATGGACGGGAATTTATGGTGAATGATGATGTGCTGATCCCGC    277
                     .||||||||.||.||....||...||||||..|..||||.||.||.||.|
BPUM_3344___h    240 ATTTTTTTACGGCCGTCCCTTCGAGGTGAACAAACATGTTCTCATTCCTC    289

BSNT_05651___    278 GGCCGGAAACTGAAGAAGTTGTCTTT----------CATTTGCTTGAAAA    317
                     |.||.|||||.|||||.||.|| |||          .|||||.|      
BPUM_3344___h    290 GACCTGAAACGGAAGAGGTCGT-TTTGGCGGCGCTGAATTTGAT------    332

BSNT_05651___    318 ATATCGGAGTG---TTTTTTCTGAAGA-CGGCAAGCTCGAAGTTGTTGAC    363
                           |||||   |.||..|..|.|| |.|| .||||.|||..||.|||
BPUM_3344___h    333 ------GAGTGACATCTTCCCGCACGATCAGC-CGCTCAAAGCAGTGGAC    375

BSNT_05651___    364 GTTGGTACAGGGAGCGGCGCAATAGCCGTCACGCTTGCGCTTGAAAACCA    413
                     ||.||||||||.|||||.|||||.||..|.|||||.||.|||||.||..|
BPUM_3344___h    376 GTGGGTACAGGAAGCGGGGCAATTGCGATTACGCTCGCTCTTGAGAAAGA    425

BSNT_05651___    414 AAGCTTTTCTGTGTCGGCGGTCGATATTTCGAAAGAGGCGCTGCAAGTCG    463
                     ||...|.|||||..|.|||...||||||||..|.||.||.||        
BPUM_3344___h    426 AACACTGTCTGTCACAGCGACGGATATTTCACATGAAGCACT--------    467

BSNT_05651___    464 CCTCTGC-----CAATGCAGAAAAA-------CTCGGAGCGAATGTGCGC    501
                         |||     |||.||.|||..|       ||.||.||..||||.|..
BPUM_3344___h    468 ----TGCGGTAGCAAAGCGGAATCAACAAGCGCTTGGTGCAGATGTCCAT    513

BSNT_05651___    502 TTTTATCAGGGCGATCTGCTTGAGCCTTT----TATTAAGGCGGGAAAAA    547
                     ||||..||.||.||..|.||.||.||..|    .||.|||||    |..|
BPUM_3344___h    514 TTTTTACAAGGGGACTTACTCGAACCGATCAAGGATCAAGGC----ATCA    559

BSNT_05651___    548 AAGCGGATATCATTGTCTCAAACCCGCCATATATTTCAGAGGAAGAAATG    597
                     |||.||||.|..||.|.||.||||||||.||||||.|.|..||.||||||
BPUM_3344___h    560 AAGTGGATCTGTTTATTTCTAACCCGCCTTATATTGCGGCAGACGAAATG    609

BSNT_05651___    598 GCTGATTTATCGGAAATTGTC-CGTTTTCATGAGCCGCTGCACGCACTCA    646
                     |..|.|||.||.||..|.||| || ...||||||||..|..|.||.||.|
BPUM_3344___h    610 GGCGGTTTGTCAGAGGTGGTCACG-AAGCATGAGCCAGTAAATGCGCTGA    658

BSNT_05651___    647 CCGATGGCGGAGACGGGCTGAAATTTTATAAGCG----GTTTATGGAAGA    692
                     |.|||||..|.||.||..||...|||||.|||||    |||..|    ||
BPUM_3344___h    659 CAGATGGACGTGATGGTTTGTGGTTTTACAAGCGTCTCGTTCGT----GA    704

BSNT_05651___    693 CATTCCGCTTG----TTATGA--AGGATAAAGTATTTGTCGTT---TTTG    733
                     ..|||..|.||    |.||||  |||         ..||||||   ||||
BPUM_3344___h    705 TCTTCACCATGTACTTCATGAGCAGG---------CGGTCGTTGTCTTTG    745

BSNT_05651___    734 AAATCGGCTGGAAACAGGGAGCG---GCGGTCAAAGAC-CTGATCCTCAA    779
                     |||||||....||.||   ||||   |..|| |||.|| ||..||.|..|
BPUM_3344___h    746 AAATCGGACATAAGCA---AGCGCAAGATGT-AAAAACACTTCTCTTGCA    791

BSNT_05651___    780 GGCATTTAAGGGAGCGGAAGTGGAAGTGC------TGAAAGATATTAATG    823
                     |.|||||   ...||||.|   ||.||.|      |.||.||||||||.|
BPUM_3344___h    792 GTCATTT---CCCGCGGCA---GATGTCCGCATCGTCAAGGATATTAACG    835

BSNT_05651___    824 GAAAAGACAGAACCATATGCGCTCTGATTCATAAAAA-------------    860
                     |.||||||.||.|..|.|||||    |..|||.||||             
BPUM_3344___h    836 GGAAAGACCGAGCTGTTTGCGC----ACACATCAAAACGGAAAGTCCGGC    881

BSNT_05651___    861 TAAATAA    867
                     |.|||||
BPUM_3344___h    882 TGAATAA    888


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