Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05647 and BPUM_3342
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:14
# Commandline: needle
# -asequence dna-align/BSNT_05647___spoIIR.1.24716.seq
# -bsequence dna-align/BPUM_3342___spoIIR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05647___spoIIR-BPUM_3342___spoIIR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05647___spoIIR-BPUM_3342___spoIIR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05647___spoIIR
# 2: BPUM_3342___spoIIR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 712
# Identity: 461/712 (64.7%)
# Similarity: 461/712 (64.7%)
# Gaps: 92/712 (12.9%)
# Score: 1414.0
#
#
#=======================================
BSNT_05647___ 1 ATG---AAAAAAACAGTAATCATTTGTATATATATCTTTCTTTTATTATC 47
||| ||||..|.|.|.||.||.|||.|.|||||.|||||.|||||||.
BPUM_3342___s 1 ATGTTTAAAAGTAAAATGATGATATGTCTTTATATGTTTCTATTATTATG 50
BSNT_05647___ 48 TGGAGCGCTCGTAGGGC-TGGCAAAAGAAGAGACGGC-ACAGAAATCGGA 95
.||.||..|.|.|...| |||| ||.||||||||.|| .|.| ..||.|.
BPUM_3342___s 51 CGGTGCTTTTGCAAACCTTGGC-AAGGAAGAGACAGCGGCTG-CTTCTGC 98
BSNT_05647___ 96 AAATCAGCCGGTGGTCATACCGGATCAGGCGATTCGTTTGAGAATATTGG 145
.|||||||..||.||.|||||.|||.|.||.|||||.||..|.||.||.|
BPUM_3342___s 99 GAATCAGCATGTTGTGATACCAGATGAAGCCATTCGATTACGCATTTTAG 148
BSNT_05647___ 146 CAAACAGCGATAGTGATCA--AGATCAGCAATTAAAACGTCATATAAGAG 193
||||.||.|||.|| ||| |||||||.|..|.|||.|....|||.|.|
BPUM_3342___s 149 CAAATAGTGATCGT--TCAGCAGATCAGGATGTGAAAAGAAGCATACGTG 196
BSNT_05647___ 194 ACGCGGTGAATAAAGAAATCAC--AACTTGGGTAAAGGATATTACTTCTA 241
|||..||.|||....|.||.|| || |||||.||.||..||||.||||
BPUM_3342___s 197 ACGAAGTCAATGCCAATATGACGGAA--TGGGTCAAAGACCTTACATCTA 244
BSNT_05647___ 242 TTGAAGAAGCGCGTCGCGTGATTCGTTCAAAGCTGCCTGAAATCAAAGCA 291
||||||||||..|.||.||||||||.||.||||||||.||||||||....
BPUM_3342___s 245 TTGAAGAAGCAAGACGTGTGATTCGGTCCAAGCTGCCAGAAATCAATCGT 294
BSNT_05647___ 292 ATTG-CAAAGGAAACAATGGAGAAA--GAAGGAGCGA--------ATCAG 330
|||| |||| |.|||| |||||||| | ||||.
BPUM_3342___s 295 ATTGCCAAA----------GCGAAATTGAAGGAGC-AGCACATTGATCAA 333
BSNT_05647___ 331 TCGATATCCGTTGATTTTGACAAAATCTCGTTTCCGACAAAGCTTTACGG 380
||..||||.||....||..|.|||..|||.|||||.|||||||||||.||
BPUM_3342___s 334 TCCGTATCAGTCAGCTTCCAAAAAGCCTCATTTCCAACAAAGCTTTATGG 383
BSNT_05647___ 381 CAACATGGTATATCCTGCCGGTGAGTATGAAGCGATTTTGATTACGCTTG 430
.||..|.||.||||||||.||..|.||||||||.|||||.||||||||.|
BPUM_3342___s 384 AAATTTCGTTTATCCTGCTGGGAAATATGAAGCCATTTTAATTACGCTAG 433
BSNT_05647___ 431 GAAACGGAGACGGCGCCAACTGGTGGTGTGTGCTGTTCCCGCCCCTCTGC 480
||.|.||.||.||.|||||.|||||||||||..|.||||||||.||.|||
BPUM_3342___s 434 GAGAAGGGGATGGAGCCAATTGGTGGTGTGTATTATTCCCGCCGCTTTGC 483
BSNT_05647___ 481 TTTCTCGATTTTTCTAACGGGGAAGCCGTC---------AAAGAACAAGA 521
|||.||||||||||.||.||.||||||.|| .|.|...|.||
BPUM_3342___s 484 TTTATCGATTTTTCAAATGGAGAAGCCATCGCATCGCCAGAGGGTGATGA 533
BSNT_05647___ 522 AGATAAAGAAG-------CCTCAAAAAAGCAGACTGAAAAAGTGCTTGAG 564
|||.||.|||| || ||||.||.|| ||||
BPUM_3342___s 534 AGAGAACGAAGTGACAGCCC-------AGCAAACAGA---------TGAG 567
BSNT_05647___ 565 GACGT-AACCGCTAAAGCGGAAAAAGCCAAAAAAGAAGAGAATAAAGAAA 613
...|| || |.||||||..||||..||.|||||||
BPUM_3342___s 568 TCTGTGAA----TGAAGCGGTCAAAGAAAAGAAAGAAG------------ 601
BSNT_05647___ 614 AAGAAGACGGCACAGAAGTGAAATTCTTTTTAGTCGAATGGATTTCCGAC 663
||||| |..||||||||||||||||||.|.||.|||.|.||....
BPUM_3342___s 602 ----AGACG--AGTGAAGTGAAATTCTTTTTATTTGATTGGGTCTCTAGT 645
BSNT_05647___ 664 CTTTTTTCCTAA 675
|||||.||||||
BPUM_3342___s 646 CTTTTCTCCTAA 657
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