Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05646 and BPUM_3341
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:14
# Commandline: needle
# -asequence dna-align/BSNT_05646___ywlB.1.24716.seq
# -bsequence dna-align/BPUM_3341___ywlB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05646___ywlB-BPUM_3341___ywlB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05646___ywlB-BPUM_3341___ywlB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05646___ywlB
# 2: BPUM_3341___ywlB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 529
# Identity: 270/529 (51.0%)
# Similarity: 270/529 (51.0%)
# Gaps: 170/529 (32.1%)
# Score: 548.0
#
#
#=======================================
BSNT_05646___ 1 ATGTTTTATCAACTGCGGGTGGCAAGGGAAAAAGACGGAGATGTGCTCGA 50
||||.||||||..|..|..|.||.|..|||.|||| |||.|.|
BPUM_3341___y 1 ATGTATTATCAGTTAAGAATAGCCACAGAAGAAGA--------TGCCCCA 42
BSNT_05646___ 51 GGCATT----------TTTAAAACAGGCAAAAACCAGCTATGAAGGC-GT 89
|.|||| ||.|||| ||| ||.|||.| ||||| ||
BPUM_3341___y 43 GCCATTAATGCTTTTCTTGAAAA-AGG-----ACAAGCGA--AAGGCGGT 84
BSNT_05646___ 90 GAAAGAAGGCTTCACT--CA-----------ATTTCTTATGCTGGA---- 122
|..| |||| || ||||.||.|..||||
BPUM_3341___y 85 GTCA--------CACTTGCAGAGCGTACGACATTTGTTGTTATGGAAGAT 126
BSNT_05646___ 123 --GGACAGTGAGAAAAACATTGCCGGATGCCTCGGTATTGAAAAAATAAG 170
||||.|| .||| |.||.||.||..|.|||.||||..||.|.|
BPUM_3341___y 127 GCGGACGGT-----CAAC-TGGCAGGGTGTTTAGGTCTTGAGCAACTGA- 169
BSNT_05646___ 171 CTGTGACC---AGGGGCTGCTGCGATCACTTGTCATATCGGACAAGCTTC 217
||||.| ||||..||||..|.||.|||||||||||.||.||.||..
BPUM_3341___y 170 --GTGAACAAGAGGGCTTGCTAAGGTCTCTTGTCATATCAGATAAACTAG 217
BSNT_05646___ 218 ACCAAGGCCATATCGTCACG-CTTT-----------TTCAAA-GCATGGA 254
..|||||.|||||||| | |||| |||||| ||.||||
BPUM_3341___y 218 GTCAAGGACATATCGT---GTCTTTATTCCAAAGTGTTCAAACGCTTGGA 264
BSNT_05646___ 255 GG------TGCTGTGCGAAAAGCATCAGATCAAAACCGTGTACCTAGTAG 298
|| .|.|||| ||| ||..|.||..|.||.|
BPUM_3341___y 265 GGAAAAATAGGTGTG------------GAT----ACGTTTTATGTCGTTG 298
BSNT_05646___ 299 CAAATCAGCATTCCTCTGCGGAC----TTTCTGACGGC---CATGGGTTT 341
|.||.||....||||| || |||.|.| || .|||||.||
BPUM_3341___y 299 CCAACCACTCCTCCTC-----ACATGATTTTTTA--GCATTGATGGGCTT 341
BSNT_05646___ 342 TGAAAGAGCT---GAGAGTGTACCGGAGGAGC-TGT---TTTCTTC---- 380
.|.|||| |||..|.|.||.|| .||| ||| |.|||.|
BPUM_3341___y 342 ---CACAGCTTTAGAGGATATTCCAGA-AAGCATGTGGGTATCTGCACAT 387
BSNT_05646___ 381 -------TGATCACTTCTGTGATTCGCGGCA-AACAGAAGGAGCCGT--- 419
.|||| ||.|||..| ||||| ||.||
BPUM_3341___y 388 GCAAAAGAGATC----------TTAGCGAAAGAACAG-----GCTGTGGT 422
BSNT_05646___ 420 --TTTGATGAAAAAAGC--GTCTGGATAA 444
||..| |||||||| || |||
BPUM_3341___y 423 TCTTCAA--AAAAAAGCCAGT-----TAA 444
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