Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05644 and BPUM_3340
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:14
# Commandline: needle
# -asequence dna-align/BSNT_05644___ywlC.1.24716.seq
# -bsequence dna-align/BPUM_3340___ywlC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05644___ywlC-BPUM_3340___ywlC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05644___ywlC-BPUM_3340___ywlC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05644___ywlC
# 2: BPUM_3340___ywlC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1135
# Identity: 720/1135 (63.4%)
# Similarity: 720/1135 (63.4%)
# Gaps: 173/1135 (15.2%)
# Score: 2030.0
#
#
#=======================================
BSNT_05644___ 1 ---ATG---AAAACGAAAAGATGGTTTGTGGATGTAACTGACGAGTTATC 44
||| ||.||.|||||.||||.|||||||.||....|.||.|||||
BPUM_3340___y 1 ATGATGTTAAATACAAAAAGGTGGTCTGTGGATTTAGAAAAGGATTTATC 50
BSNT_05644___ 45 CACAAATGATCCACAAATTGCACAAGCAGCCGCT----TTGCTCCGAG-A 89
||||.|..||||||||||||.|||.|||| |||| ||| .|| |
BPUM_3340___y 51 CACATACTATCCACAAATTGAACAGGCAG-CGCTGTTATTG----AAGCA 95
BSNT_05644___ 90 AAATGAGGTCGTTGCCTTTCCGACAGAAACAGTATATGGCCTAGGCGCAA 139
|||.||.||.||.||.||||||||||||||.||.|||||.|||||.||.|
BPUM_3340___y 96 AAACGAAGTAGTCGCTTTTCCGACAGAAACGGTGTATGGACTAGGGGCTA 145
BSNT_05644___ 140 ACGCAAAAAATACGGATGCCGTCAAAAAAATATATGAGGCGAAAGGACGG 189
|.||||||.|.||.||.||.||||..|||||||||||.||||||||.||.
BPUM_3340___y 146 ATGCAAAAGAGACAGAAGCTGTCATGAAAATATATGAAGCGAAAGGGCGT 195
BSNT_05644___ 190 CCGAGCGATAATCCCCTGATTGTCCACATTGCGGA--TATCAGCCAGCTT 237
||.||.||||||||..||||||||||||||||.|| | |.|| ||||||
BPUM_3340___y 196 CCAAGTGATAATCCATTGATTGTCCACATTGCCGAGGT-TGAG-CAGCTT 243
BSNT_05644___ 238 GA-GGATTTAACGGGCCC--------AGCGCCGGAAAAG-GCGAAAACAT 277
.| |.|||| ||.| ||.| |||| ||.||..|||
BPUM_3340___y 244 CATGAATTT-----GCACAAATAGAAAGTG-----AAAGAGCAAAGGCAT 283
BSNT_05644___ 278 TGATGAAACGGTTTTGGCCGGGAGCACTTACGCTCATACTGCCTTGCAAA 327
||||||||...||||||||.||.||..|.||..|..|.||.||.|| .||
BPUM_3340___y 284 TGATGAAAGCCTTTTGGCCTGGTGCTTTAACCATTGTGCTTCCGTG-TAA 332
BSNT_05644___ 328 CCTGGTGCGCTT--TCACCTCGTGTAACGGCAGGTC--------TTGAT- 366
.|||| ||.||| ||| || ||||||| ||.||
BPUM_3340___y 333 GCTGG-GCACTTTATCA--------AA--GCAGGTCACAGCGGGTTTATC 371
BSNT_05644___ 367 -ACGGTTGCCATTAGAATGCCGGATCATCCACTTGCCCTTGCATTGATTC 415
|||||.|...|.||||||||.||.|||||..||||.||||...|.||.|
BPUM_3340___y 372 CACGGTCGGTGTGAGAATGCCTGACCATCCGATTGCGCTTGAGCTTATCC 421
BSNT_05644___ 416 GCGAATCG---GGACTGCCGATTGCAGCACCGAGCGCCAATCTATCAGGC 462
| |.|| ||.|||||||||||.||.||.||.|||||.|..|||||.
BPUM_3340___y 422 G---AACGGCTGGTCTGCCGATTGCCGCTCCAAGTGCCAACCGTTCAGGT 468
BSNT_05644___ 463 AAGCCAAGTCCCACAAAAGCAGAGCATGTGGCACACGACTTGGATGGCCG 512
||.||...|||.|||.||||.||.|||||.|||...||..|.|||||..|
BPUM_3340___y 469 AAACCTTCTCCGACACAAGCTGACCATGTAGCAAGTGATCTCGATGGGAG 518
BSNT_05644___ 513 CATAGCCGGTATTATGGATGGAGGCCCTACCGGAATCGGGGTTGAATCAA 562
.||.||.||.|||.|.|||||.||..|.||.||.||.||.|||||.||||
BPUM_3340___y 519 AATCGCTGGGATTGTCGATGGTGGTTCAACTGGTATTGGCGTTGAGTCAA 568
BSNT_05644___ 563 CCGTGCTTTCATGTGCGGACGACATCCCTGTTCTCCTGCGTCCTGGCGGT 612
|.||..|.||.||||.|||.||.||.||.||..||||..|.||.|||||.
BPUM_3340___y 569 CGGTCGTATCCTGTGTGGATGAGATTCCAGTCATCCTAAGACCGGGCGGA 618
BSNT_05644___ 613 ATTACGAAGGAACAAATTGAAGCGGT-----GATCGGGCCGATTCA-TGT 656
|||||.||.|||....|.||||.||| ||.||| ||| |.|
BPUM_3340___y 619 ATTACAAAAGAAGCTTTAGAAGAGGTAGTAGGAACGG------TCAGTAT 662
BSNT_05644___ 657 GGATAAAGGGCTCAGCGATCAAAACGA-GAA--GCCGATTTCTCCAGGGA 703
.||...||||||.| |.| ||||.|| ||| |||..|.||.|||||||
BPUM_3340___y 663 TGACCCAGGGCTGA-CAA--AAAAGGACGAAGCGCCTGTATCGCCAGGGA 709
BSNT_05644___ 704 TGAAATATACACATTATGCGCC-GACAGCGCCTCT------TGCCATTTG 746
|||||||.|||||.|||||.|| || || || |.||.|||.
BPUM_3340___y 710 TGAAATACACACACTATGCCCCTGA-AG-----CTAAAATGTACCTTTTT 753
BSNT_05644___ 747 C---GAAG-GCAGCCCAGAGCGCATT-CAGCACCTCATTCAAGAATATCA 791
| |||| |..| .|||| || ||||..|.|||||||..|||.||
BPUM_3340___y 754 CATGGAAGTGATG--AAGAG----TTGCAGCGTCACATTCAAACATACCA 797
BSNT_05644___ 792 -ACAG--GGCGGAAGACGGGTCGGTGTCCTGACGACAGAAGAAAACGCGG 838
|||| ||...||.| ||.|||||.|||||.|||||||||||
BPUM_3340___y 798 GACAGAAGGTTTAAAA---GTGGGTGTGCTGACAACAGAAGAAAA----- 839
BSNT_05644___ 839 G----CGTT-TATTCCGCTGATTATGTGAAGAGCTGCGGAAGACGGGCTC 883
| |||| |.|.|.||.|||..|||....|||||.|||.|..|.|...
BPUM_3340___y 840 GAAATCGTTGTTTGCGGCAGATGTTGTTTTCAGCTGTGGATGGAGAGAAA 889
BSNT_05644___ 884 AGCTTGAGACTGTTGCGGCAGGGCTGTAT---GATGCTTTGCG-CAGCTT 929
|.|.|||.||..|.||.|||....|.||| | ||| ||.| || .||
BPUM_3340___y 890 AACCTGAAACGATAGCAGCAAACTTATATCGCG-TGC--TGAGACA-ATT 935
BSNT_05644___ 930 TGATGAGAATAAGGTGGATTTGATTATCTCGGAATCCTTTCCGGACA-CA 978
||||||||...|.||.|||.|.|||||.||.|||.|||||.| |.| ||
BPUM_3340___y 936 TGATGAGACAGATGTAGATGTTATTATTTCAGAAACCTTTTC--AAAGCA 983
BSNT_05644___ 979 -GGTGTCGGTCTC-GCCATTATGAACAGGCTGATGAAAGCCGCCGGAGG- 1025
||.||.||| || ||.|||||||||.|.|||...|||||.||.|||||
BPUM_3340___y 984 GGGGGTTGGT-TCAGCGATTATGAACCGTCTGCAAAAAGCGGCAGGAGGG 1032
BSNT_05644___ 1026 -------------------AAGAGTGATTCGCTGA 1041
||.||
BPUM_3340___y 1033 CGCACTCTCTCTTCATTCAAATAG----------- 1056
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