Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05643 and BPUM_3339

See Amino acid alignment / Visit BSNT_05643 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:14
# Commandline: needle
#    -asequence dna-align/BSNT_05643___ywlD.1.24716.seq
#    -bsequence dna-align/BPUM_3339___ywlD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05643___ywlD-BPUM_3339___ywlD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05643___ywlD-BPUM_3339___ywlD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05643___ywlD
# 2: BPUM_3339___ywlD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 595
# Identity:     373/595 (62.7%)
# Similarity:   373/595 (62.7%)
# Gaps:          77/595 (12.9%)
# Score: 1056.5
# 
#
#=======================================

BSNT_05643___      1 ATGT-CGGATTTGTTTATAGGCGAACTGATTACATTAAGCATCATGGCGT     49
                     |||| ||.|.|.|    ..||||||.||.|.||..|.|||||||||||.|
BPUM_3339___y      1 ATGTACGAACTAG----CCGGCGAATTGCTGACGCTCAGCATCATGGCTT     46

BSNT_05643___     50 TTGCTTTAGGGATGGATGCTTTTTCTGTAGGCCTTGGAATGGGCATGGTC     99
                     ||||..|||||||||||||||||||.||.||.|||||.|||||.|||.|.
BPUM_3339___y     47 TTGCACTAGGGATGGATGCTTTTTCGGTTGGACTTGGCATGGGAATGATT     96

BSNT_05643___    100 AAACTTAGAAAGAAG------CAGAT-ATTCTATATTGGTTTCATCATCG    142
                     .|.||      ||.|      ||||| ||| ||||||||..|..||||.|
BPUM_3339___y     97 CAGCT------GAGGTTCCGCCAGATCATT-TATATTGGACTTGTCATTG    139

BSNT_05643___    143 GCCTCTTTCACGTCATCATGCCTCTCGCAGGGATGGCGGCCGGTAACA--    190
                     |..|.|||||..|..|.|||||.||....||.||       |.|||||  
BPUM_3339___y    140 GGATATTTCATATGTTTATGCCGCTTTTTGGTAT-------GCTAACAGG    182

BSNT_05643___    191 -----TGCTGTCAG---GGCTC---CTCGGCGTGTTAGCGGTTTATATCG    229
                          |.||.||||   |||||   |||  |.||..|.|    |||||||
BPUM_3339___y    183 TCAACTCCTATCAGGCTGGCTCGGTCTC--CTTGCCACC----TATATCG    226

BSNT_05643___    230 GTGGGGCGCTGCTTTTTGTTCTTGGGGTTCAAATGCTTATGGCCTCTTTT    279
                     |.||||||||||||||.||.||.||..|.||||||.|.||.||.|||.||
BPUM_3339___y    227 GCGGGGCGCTGCTTTTGGTGCTCGGTCTGCAAATGATCATTGCGTCTATT    276

BSNT_05643___    280 --AAACAGTCAGAAG---AACGATTCATGTCACCGGCAGG-GCCGGGCTT    323
                       |||     |||||   |.|.|||.||..||||.|..|| ||.||.|||
BPUM_3339___y    277 CGAAA-----AGAAGATAAGCCATTTATCGCACCAGTTGGCGCTGGTCTT    321

BSNT_05643___    324 ATTGCTGTTTGCCATCGGCGTCAGCCTTGACAGCTTTTCCGTCGGCTTGA    373
                     .|| ||.|||||.|...|.|||||..|.||.||.||||||||.||.||.|
BPUM_3339___y    322 GTT-CTTTTTGCAACAAGTGTCAGTTTAGATAGTTTTTCCGTTGGTTTAA    370

BSNT_05643___    374 GCTTGGGGATATACGGCTCGCAT----------CCGTTCCTCACAATTAC    413
                     ||.|.||.||.|||||.||.|||          ||.||        ||| 
BPUM_3339___y    371 GCCTTGGAATTTACGGTTCTCATGTATGGATGACCATT--------TTA-    411

BSNT_05643___    414 CCTGTTCGGGCTGTTTAGCATGATGTTGACATGGCTGGGCCTGCTGGTCG    463
                      .||||.||..|.|||||.|||||..|.||.|||||.||..|..|..|||
BPUM_3339___y    412 -TTGTTTGGTTTTTTTAGTATGATCCTCACTTGGCTTGGATTATTACTCG    460

BSNT_05643___    464 GAAAACAAGTGCAGTCATGGCTTGGCACATACAGCGAAGCGCTCGGGGGC    513
                     |.|||||.||.|..||||||.|.||..|.||.||||..|||||.||.||.
BPUM_3339___y    461 GTAAACAGGTTCGATCATGGGTGGGATCCTATAGCGGGGCGCTTGGCGGA    510

BSNT_05643___    514 ATCATATTAATCGTGTTTGGACTAAAGCTGCTTTTGCCAATTTAA    558
                     |||||.|||.|.|..|||||..|.||..|..|.||.||..|.||.
BPUM_3339___y    511 ATCATTTTACTAGCCTTTGGTATCAAATTATTATTTCCGCTCTAG    555


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